Clonal evolution of the 3D chromatin landscape of relapsed ALL [Hi-C]
human · 24 samples
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 24 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
- Paper
- Clonal evolution of the 3D chromatin landscape in patients with relapsed pediatric B-cell acute lymphoblastic leukemiaNature communications · 2024
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE222679_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA923008. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 24 sample titles: 24 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6928867 PATIKJ-D Hi-C
- GSM6928868 PATIKJ-R Hi-C
- GSM6928869 PATJJX-D Hi-C
- GSM6928870 PATJJX-R Hi-C
- GSM6928871 PATSAH-D Hi-C
- GSM6928872 PATSAH-R Hi-C
- GSM6928873 PASJTK-D Hi-C
- GSM6928874 PASJTK-R Hi-C
- GSM6928875 PASYFN-D Hi-C
- GSM6928876 PASYFN-R Hi-C
- GSM6928877 SJINF001-D Hi-C
- GSM6928878 SJINF001-R Hi-C
- GSM6928879 PANGUA-D Hi-C
- GSM6928880 PANGUA-R Hi-C
- GSM6928881 SJETV043-D Hi-C
- GSM6928882 SJETV043-R Hi-C
- GSM6928883 SJPHALL005-D Hi-C
- GSM6928884 SJPHALL005-R Hi-C
- GSM6928885 PASFIF-D Hi-C
- GSM6928886 PASFIF-R Hi-C
- GSM6928887 PASMEN-D Hi-C
- GSM6928888 PASMEN-R Hi-C
- GSM6928889 PASPNY-D Hi-C
- GSM6928890 PASPNY-R Hi-C
- GSE296381 Clonal evolution permits outgrowth of chemoresistant LMPP-like early progenitors in relapsed NPM1c AML 20 samples shares evolution, relapsed, clonal
- GSE243298 3D Chromatin Remodeling in B-cell Development and B-cell Acute Lymphoblastic Leukemia [Hi-C] 35 samples shares chromatin, hi-c
- GSE193413 Super-silencer perturbation by EZH2 and REST inhibition leads to large loss of chromatin interactions and reduction in cancer growth [Hi-C] 28 samples shares chromatin, hi-c
- GSE263733 Single-cell transcriptome analysis reveals subtype-specific clonal evolution and microenvironmental changes in liver metastasis of pancreatic adenocarcinoma and their clinical implications 218 samples shares evolution, clonal
- GSE300628 HER2 heterogeneous breast cancer models reveal novel therapeutic targets and subclonal dynamics during evolution to resistance to HER2-targeted therapies 60 samples shares evolution, clonal
- GSE305751 Temporal and Clonal Resolution of Cellular Evolution Under Stress 42 samples shares evolution, clonal
- GSE277083 Single cell RNA sequencing of Ewing sarcoma tumors demonstrate transcriptional heterogeneity and clonal evolution 15 samples shares evolution, clonal
- GSE204911 Mapping genotypes to chromatin accessibility profiles in single cells [Genotyping GoT-ChA amplicon] 27 samples shares chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.