Nanopore long-read sequencing from Nutlin-3a-treated MCF-7 cells
RNA-seq (gene expression) · human · 2 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Gene regulation by convergent promotersNature genetics · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE226080_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA938478 and SRA study SRP424523. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE223513 QuantSeq from Nutlin-3a-treated MCF-7, U2OS, and RPE-1 cells 20 samples shares mcf-7, nutlin-3a-treated
- GSE223512 CAGE-seq from Nutlin-3a-treated MCF-7, U2OS, and RPE-1 cells 20 samples shares mcf-7, nutlin-3a-treated
- GSE250017 ATAC-seq from Nutlin-3a-treated MCF-7 cells 8 samples shares mcf-7, nutlin-3a-treated
- GSE223088 Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells 6 samples shares long-read, nanopore
- GSE293661 A nanopore long-read transcriptome in pancreatic cancer cells 20 samples shares long-read, nanopore
- GSE293395 Nanopore long-reads sequencing of hepatitis A virus RNAs 6 samples shares long-read, nanopore
- GSE277764 Nanopore long-read RNA sequencing in untreated (UN), sodium arsenite (SA) and heat shock (HS) stressed HeLa cells 12 samples shares long-read, nanopore
- GSE241306 Effect of TOP1 knockdown and/or RNase H OE on the transcriptional profile of MCF-7 cells [CEL_Seq] 16 samples shares mcf-7
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.