Gene expression profiling study to identify molecular markers exhibiting distinct characteristics of Pseudomyxoma Peritonei [Fresh Frozen]
RNA-seq (gene expression) · human · 19 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 19 samples: 19 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Molecular characterization of Pseudomyxoma peritonei with single-cell and bulk RNA sequencingScientific data · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE228376_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA949593. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 19 sample titles: 19 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7119880 PMP-1N_RNA-seq
- GSM7119881 PMP-3N_RNA-seq
- GSM7119882 PMP-4N_RNA-seq
- GSM7119883 PMP-5N_RNA-seq
- GSM7119884 PMP-6N_RNA-seq
- GSM7119885 PMP-7N_RNA-seq
- GSM7119886 PMP-9N_RNA-seq
- GSM7119887 PMP-1_RNA-seq
- GSM7119888 PMP-2_RNA-seq
- GSM7119889 PMP-3_RNA-seq
- GSM7119890 PMP-4_RNA-seq
- GSM7119891 PMP-5_RNA-seq
- GSM7119892 PMP-6_RNA-seq
- GSM7119893 PMP-7_RNA-seq
- GSM7119894 PMP-8_RNA-seq
- GSM7119895 PMP-9_RNA-seq
- GSM7119896 PMP-10_RNA-seq
- GSM7119897 PMP-11_RNA-seq
- GSM7119898 PMP-12_RNA-seq
- GSE228375 A gene expression profiling study to identify distinct molecular markers in formalin-fixed, paraffin-embedded samples of Pseudomyxoma Peritonei [FFPE] 34 samples shares pseudomyxoma, peritonei, distinct, markers
- GSE297863 Immune-related cutaneous adverse events display distinct clinical and molecular characteristics, depending on immune checkpoints targeted 32 samples shares characteristics, distinct
- GSE266302 Cell of origin and expression profiles of pseudomyxoma peritonei derived from the appendix 20 samples shares pseudomyxoma, peritonei
- GSE287333 Myeloid-derived suppressor cells exhibit distinct characteristics in bone marrow and blood of individuals with diffuse large B-cell lymphoma 19 samples shares characteristics, distinct
- GSE216803 Transcriptomic and Metabolomic Analyses Reveal Distinctive Metabolic Characteristics of Superficial and Deep Subcutaneous Adipose Tissues 12 samples shares characteristics, distinct
- GSE297016 Distinct Characteristics of Brain Metastasis in Lung Adenocarcinoma: Development of High-Confidence Cell Lines 12 samples shares characteristics, distinct
- GSE228377 Single-cell RNA-seq profiling of Pseudomyxoma Peritonei 5 samples shares pseudomyxoma, peritonei
- GSE40967 Gene expression Classification of Colon Cancer defines six molecular subtypes with distinct clinical, molecular and survival characteristics 1048 samples shares characteristics, distinct
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.