Gene expression profile at single cell level of monocytes sorted from C57BL/6J mouse ear tissue at 3 weeks post Leishmania major infection [scRNA-seq]
Single-cell RNA-seq · mouse · 218 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 218 samples: 218 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE228455_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA949956 and SRA study SRP429934. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 218 sample titles: 218 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7120828 High-proliferating Leishmania major infected-single cell#1 , Mouse#2_Left ear [1_A4]
- GSM7120829 High-proliferating Leishmania major infected-single cell#2 , Mouse#2_Right ear [1_A9]
- GSM7120830 High-proliferating Leishmania major infected-single cell#3 , Mouse#3_Right ear [1_B10]
- GSM7120831 High-proliferating Leishmania major infected-single cell#4 , Mouse#2_Left ear [1_B4]
- GSM7120832 High-proliferating Leishmania major infected-single cell#5 , Mouse#4_Right ear [1_B6]
- GSM7120833 High-proliferating Leishmania major infected-single cell#6 , Mouse#5_Left ear [1_B7]
- GSM7120834 High-proliferating Leishmania major infected-single cell#7 , Mouse#2_Right ear [1_B9]
- GSM7120835 High-proliferating Leishmania major infected-single cell#8 , Mouse#4_Left ear [1_C11]
- GSM7120836 High-proliferating Leishmania major infected-single cell#9 , Mouse#2_Right ear [1_C4]
- GSM7120837 High-proliferating Leishmania major infected-single cell#10 , Mouse#1_Left ear [1_D7]
- GSM7120838 High-proliferating Leishmania major infected-single cell#11 , Mouse#4_Left ear [1_E11]
- GSM7120839 High-proliferating Leishmania major infected-single cell#12 , Mouse#1_Left ear [1_E7]
- GSM7120840 High-proliferating Leishmania major infected-single cell#13 , Mouse#1_Right ear [1_F12]
- GSM7120841 High-proliferating Leishmania major infected-single cell#14 , Mouse#3_Right ear [1_F4]
- GSM7120842 High-proliferating Leishmania major infected-single cell#15 , Mouse#4_Left ear [1_F5]
- GSM7120843 High-proliferating Leishmania major infected-single cell#16 , Mouse#1_Left ear [1_F7]
- GSM7120844 High-proliferating Leishmania major infected-single cell#17 , Mouse#4_Right ear [1_G11]
- GSM7120845 High-proliferating Leishmania major infected-single cell#18 , Mouse#1_Right ear [1_G12]
- GSM7120846 High-proliferating Leishmania major infected-single cell#19 , Mouse#3_Right ear [1_G4]
- GSM7120847 High-proliferating Leishmania major infected-single cell#20 , Mouse#1_Right ear [1_G7]
- GSM7120848 High-proliferating Leishmania major infected-single cell#21 , Mouse#2_Left ear [1_G8]
- GSM7120849 High-proliferating Leishmania major infected-single cell#22 , Mouse#4_Right ear [1_H11]
- GSM7120850 High-proliferating Leishmania major infected-single cell#23 , Mouse#1_Right ear [1_H12]
- GSM7120851 High-proliferating Leishmania major infected-single cell#24 , Mouse#2_Left ear [1_H3]
- GSM7120852 High-proliferating Leishmania major infected-single cell#25 , Mouse#1_Right ear [1_H7]
- GSM7120853 High-proliferating Leishmania major infected-single cell#26 , Mouse#2_Left ear [2_A4]
- GSM7120854 High-proliferating Leishmania major infected-single cell#27 , Mouse#5_Left ear [2_A6]
- GSM7120855 High-proliferating Leishmania major infected-single cell#28 , Mouse#1_Right ear [2_A7]
- GSM7120856 High-proliferating Leishmania major infected-single cell#29 , Mouse#1_Right ear [2_A8]
- GSM7120857 High-proliferating Leishmania major infected-single cell#30 , Mouse#2_Right ear [2_A9]
- GSM7120858 High-proliferating Leishmania major infected-single cell#31 , Mouse#3_Left ear [2_B10]
- GSM7120859 High-proliferating Leishmania major infected-single cell#32 , Mouse#4_Left ear [2_B2]
- GSM7120860 High-proliferating Leishmania major infected-single cell#33 , Mouse#2_Right ear [2_B9]
- GSM7120861 High-proliferating Leishmania major infected-single cell#34 , Mouse#1_Left ear [2_C1]
- GSM7120862 High-proliferating Leishmania major infected-single cell#35 , Mouse#4_Right ear [2_C2]
- GSM7120863 High-proliferating Leishmania major infected-single cell#36 , Mouse#4_Right ear [2_D11]
- GSM7120864 High-proliferating Leishmania major infected-single cell#37 , Mouse#4_Right ear [2_E11]
- GSM7120865 High-proliferating Leishmania major infected-single cell#38 , Mouse#4_Left ear [2_E5]
- GSM7120866 High-proliferating Leishmania major infected-single cell#39 , Mouse#1_Right ear [2_E6]
- GSM7120867 High-proliferating Leishmania major infected-single cell#40 , Mouse#1_Left ear [2_E7]
+ 178 more — browse all 218 samples with per-sample file links →
- GSE279918 Gene expression profile at single cell level of lungs of adult male and female C57BL/6 mice with andwithout high-fat diet-induced obesity 12 samples shares c57bl, level
- GSE306035 scRNA-Seq of immune populations from nasal mucosa and lungs of C57BL/6 mice and BLT1 receptor deficient mice infected intranasally with MCMV K181 strain 20 samples shares c57bl, scrna-seq
- GSE319684 Timecourse of FACS sorted Ly6C+ monocytes, tissue resident alveolar macrophages (trAMs), monocyte derived alveolar macrophages (bmAMs) and epithelial cells from SARS-CoV-2 (maVie16) vs. IAV (PR8) infected mouse lungs 176 samples shares monocytes, sorted
- GSE274183 A novel noninvasive murine model of neonatal hypoxic ischemic encephalopathy demonstrates developmental delay and motor deficits with activation of inflammatory pathways in monocytes [scRNA-seq] 24 samples shares monocytes, scrna-seq
- GSE293937 scRNA-seq of fasted or 1 hour refed mouse hypothalamus after 6 weeks of HFD 13 samples shares scrna-seq, weeks
- GSE218339 Gene expression profile at single cell level of murine colon organoids harbouring colorectal cancer-associated driver mutations [scRNA-seq] 9 samples shares scrna-seq, level
- GSE302019 Bulk RNA sequencing to investigate transcriptional profiles of lung macrophage subpopulations isolated from wild-type C57BL/6J and Spp1-EGFP knock-in reporter mice subjected to intratracheal administration of bleomycin or PBS. 24 samples shares c57bl
- GSE330380 The effects of adiponectin knockout on hepatic gene expression in male and female C57BL/6NCrl mice fed ad libitum or undergoing caloric restriction 22 samples shares c57bl
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.