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Integrated analysis of messenger RNA and microRNA in patients with community-acquired pneumonia associated sepsis

GSE228542 Homo sapiens (human) Non-coding RNA profiling 58 samples Submitted 2025/04/09 Platform GPL24676Platform GPL28038
At a glance

Non-coding RNA profiling · human · 58 samples

What it is
Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
Organism
Homo sapiens (human)
Samples
58 samples: 58 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Paper
mRNA-miRNA integration analysis of T-cell exhaustion in sepsis from community-acquired pneumoniaAcute medicine & surgery · 2025
SuperSeries — this record groups several sub-series.
Summary (written by the submitters)
This SuperSeries is composed of the SubSeries listed below.
Published in
mRNA-miRNA integration analysis of T-cell exhaustion in sepsis from community-acquired pneumonia
Oda S, Matsumoto H, Togami Y et al. · Acute medicine & surgery 2025 · PMID 40177597 · doi:10.1002/ams2.70054
This dataset
Open GSE228542 in finder → Find more human datasets →
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓
2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE228542_RAW.tar (it can run to tens of gigabytes).

All supplementary files ↗ Whole study · RAW.tar ↓
3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

Raw reads on ENA ↗

Also filed as BioProject PRJNA950313 and SRA study SRP430105. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 40177597) ↗
Study design
58 samples, each with a distinct title — no replicated groups

Supports a case/control comparison: 28 samples read as cases, 30 as controls.

How we read this: Read from 58 sample titles: 58 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

Samples in this study

+ 18 more — browse all 58 samples with per-sample file links →

Datasets on a similar topic

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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.