C2H2-zinc finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA962822 and SRA study SRP435012. Searching any of these in the dataset finder brings you back here.

Supports a case/control comparison: 9 samples read as cases, 4 as controls.

How we read this: 89 replicated groups read from 219 sample titles; they account for 202 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

• GSM7244932 iCLIP-Seq of ADAR1, replicate 1 iCLIP-Seq of ADAR1,
• GSM7244933 iCLIP-Seq of ADAR1, replicate 2 iCLIP-Seq of ADAR1,
• GSM7244934 iCLIP-Seq of ADAR1, replicate 3 iCLIP-Seq of ADAR1,
• GSM7244935 iCLIP-Seq of ADAR1, replicate 4 iCLIP-Seq of ADAR1,
• GSM7244936 iCLIP-Seq of ALYREF, replicate 1 iCLIP-Seq of ALYREF,
• GSM7244937 iCLIP-Seq of ALYREF, replicate 2 iCLIP-Seq of ALYREF,
• GSM7244938 iCLIP-Seq of CBLL1, replicate 1 iCLIP-Seq of CBLL1,
• GSM7244939 iCLIP-Seq of CBLL1, replicate 2 iCLIP-Seq of CBLL1,
• GSM7244940 iCLIP-Seq of CBLL2 (ZNF645), replicate 1 iCLIP-Seq of CBLL2 (ZNF…
• GSM7244941 iCLIP-Seq of CBLL2 (ZNF645), replicate 2 iCLIP-Seq of CBLL2 (ZNF…
• GSM7244942 iCLIP-Seq of CHTOP, replicate 1 iCLIP-Seq of CHTOP,
• GSM7244943 iCLIP-Seq of CHTOP, replicate 2 iCLIP-Seq of CHTOP,
• GSM7244944 iCLIP-Seq of CMTR1, replicate 1 iCLIP-Seq of CMTR1,
• GSM7244945 iCLIP-Seq of CMTR1, replicate 2 iCLIP-Seq of CMTR1,
• GSM7244946 iCLIP-Seq of CTCF, replicate 1 iCLIP-Seq of CTCF,
• GSM7244947 iCLIP-Seq of CTCF, replicate 2 iCLIP-Seq of CTCF,
• GSM7244948 iCLIP-Seq of DEK, replicate 1 iCLIP-Seq of DEK,
• GSM7244949 iCLIP-Seq of DEK, replicate 2 iCLIP-Seq of DEK,
• GSM7244950 iCLIP-Seq of DEK, replicate 3 iCLIP-Seq of DEK,
• GSM7244951 iCLIP-Seq of DEK, replicate 4 iCLIP-Seq of DEK,
• GSM7244952 iCLIP-Seq of EGR2, replicate 1 iCLIP-Seq of EGR2,
• GSM7244953 iCLIP-Seq of EGR2, replicate 2 iCLIP-Seq of EGR2,
• GSM7244954 iCLIP-Seq of GFP, replicate 1 iCLIP-Seq of GFP,
• GSM7244955 iCLIP-Seq of GFP, replicate 2 iCLIP-Seq of GFP,
• GSM7244956 iCLIP-Seq of GFP, replicate 3 iCLIP-Seq of GFP,
• GSM7244957 iCLIP-Seq of GFP, replicate 4 iCLIP-Seq of GFP,
• GSM7244958 iCLIP-Seq of GTF3A, replicate 1 iCLIP-Seq of GTF3A,
• GSM7244959 iCLIP-Seq of GTF3A, replicate 2 iCLIP-Seq of GTF3A,
• GSM7244960 iCLIP-Seq of GTF3A, replicate 3 iCLIP-Seq of GTF3A,
• GSM7244961 iCLIP-Seq of H1F0, replicate 1 iCLIP-Seq of H1F0,
• GSM7244962 iCLIP-Seq of H1F0, replicate 2 iCLIP-Seq of H1F0,
• GSM7244963 iCLIP-Seq of H1F0, replicate 3 iCLIP-Seq of H1F0,
• GSM7244964 iCLIP-Seq of H1F0, replicate 4 iCLIP-Seq of H1F0,
• GSM7244965 iCLIP-Seq of HMGB2, replicate 1 iCLIP-Seq of HMGB2,
• GSM7244966 iCLIP-Seq of HMGB2, replicate 2 iCLIP-Seq of HMGB2,
• GSM7244967 iCLIP-Seq of HMGB2, replicate 3 iCLIP-Seq of HMGB2,
• GSM7244968 iCLIP-Seq of IFIT2, replicate 1 iCLIP-Seq of IFIT2,
• GSM7244969 iCLIP-Seq of IFIT2, replicate 2 iCLIP-Seq of IFIT2,
• GSM7244970 iCLIP-Seq of IFIT2, replicate 3 iCLIP-Seq of IFIT2,
• GSM7244971 Size-matched input for ADAR iCLIP-Seq

+ 179 more — browse all 219 samples with per-sample file links →

• GSE302930 Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes 92 samples shares transcription, regulatory, factors
• GSE301298 Functional redundancy between UTY and UTX in regulating the localization of transcription factors involved in pluripotency 88 samples shares transcription, factors
• GSE275721 Lineage master regulator and cancer-selective partner transcription factors rewire 3D genome topology for tumor-specific gene control 72 samples shares transcription, factors
• GSE293334 Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [ChIP-seq] 60 samples shares transcription, factors
• GSE182605 Integrative gene regulatory analysis reveals transcriptional mechanisms required in mature human hepatocytes and during in vitro hepatocyte differentiation 35 samples shares transcription, regulatory
• GSE327727 D-SPIN constructs regulatory network models from scRNA-seq revealing organizing principles of perturbation response 194 samples shares regulatory
• GSE325670 Promoter mutagenesis and a massively parallel reporter screen of the MAPT locus identifies cis-regulatory elements and genetic variation effects 140 samples shares regulatory
• GSE337533 A Single-Cell Atlas of Transcriptional and Immunoglobulin Repertoire Evolution in Early B Cell Development 66 samples shares transcription

Search all human RNA-seq datasets in GEO →