Single-cell profiling reveals immune aberrations in progressive idiopathic pulmonary fibrosis
Single-cell RNA-seq · human · 38 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 38 samples: 13 × Stable IPF patient vs 13 × Control Subject vs 12 × Progressive IPF patientGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Single-Cell Profiling Reveals Immune Aberrations in Progressive Idiopathic Pulmonary FibrosisAmerican journal of respiratory and critical care medicine · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE233844_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA978083 and SRA study SRP440530. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 25 samples read as cases, 13 as controls.
How we read this: 3 replicated groups read from 38 sample titles; they account for 38 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7437857 Progressive IPF patient 1 Progressive IPF patient
- GSM7437858 Progressive IPF patient 2 Progressive IPF patient
- GSM7437859 Progressive IPF patient 3 Progressive IPF patient
- GSM7437860 Progressive IPF patient 4 Progressive IPF patient
- GSM7437861 Progressive IPF patient 5 Progressive IPF patient
- GSM7437862 Progressive IPF patient 6 Progressive IPF patient
- GSM7437863 Progressive IPF patient 7 Progressive IPF patient
- GSM7437864 Progressive IPF patient 8 Progressive IPF patient
- GSM7437865 Progressive IPF patient 9 Progressive IPF patient
- GSM7437866 Progressive IPF patient 10 Progressive IPF patient
- GSM7437867 Progressive IPF patient 11 Progressive IPF patient
- GSM7437868 Progressive IPF patient 12 Progressive IPF patient
- GSM7437869 Stable IPF patient 14 Stable IPF patient
- GSM7437870 Stable IPF patient 15 Stable IPF patient
- GSM7437871 Stable IPF patient 16 Stable IPF patient
- GSM7437872 Stable IPF patient 17 Stable IPF patient
- GSM7437873 Stable IPF patient 18 Stable IPF patient
- GSM7437874 Stable IPF patient 19 Stable IPF patient
- GSM7437875 Stable IPF patient 20 Stable IPF patient
- GSM7437876 Stable IPF patient 21 Stable IPF patient
- GSM7437877 Stable IPF patient 22 Stable IPF patient
- GSM7437878 Stable IPF patient 23 Stable IPF patient
- GSM7437879 Stable IPF patient 24 Stable IPF patient
- GSM7437880 Stable IPF patient 25 Stable IPF patient
- GSM7437881 Stable IPF patient 26 Stable IPF patient
- GSM7437882 Control Subject 27 Control Subject
- GSM7437883 Control Subject 29 Control Subject
- GSM7437884 Control Subject 30 Control Subject
- GSM7437885 Control Subject 31 Control Subject
- GSM7437886 Control Subject 32 Control Subject
- GSM7437887 Control Subject 33 Control Subject
- GSM7437888 Control Subject 34 Control Subject
- GSM7437889 Control Subject 35 Control Subject
- GSM7437890 Control Subject 36 Control Subject
- GSM7437891 Control Subject 37 Control Subject
- GSM7437892 Control Subject 38 Control Subject
- GSM7437893 Control Subject 39 Control Subject
- GSM7437894 Control Subject 40 Control Subject
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.