SMYD5 is a regulator of the mild hypothermia response
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 127 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 127 samples: 35 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- SMYD5 is a regulator of the mild hypothermia responseCell reports · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE234699_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA982776 and SRA study SRP442880. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 111 samples.
How we read this: 35 replicated groups read from 127 sample titles; they account for 111 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7473346 NPC, 37°C, replicate 1 NPC, 37°C,
- GSM7473347 NPC, 37°C, replicate 2 NPC, 37°C,
- GSM7473348 NPC, 37°C, replicate 3 NPC, 37°C,
- GSM7473349 NPC, 32°C, replicate 1 NPC, 32°C,
- GSM7473350 NPC, 32°C, replicate 2 NPC, 32°C,
- GSM7473351 NPC, 32°C, replicate 3 NPC, 32°C,
- GSM7473352 NPC, 32°C, replicate 4 NPC, 32°C,
- GSM7473389 HEK293WT, H3K36me3, 6 h at 32°C, replicate 1 HEK293WT, H3K36me3, 6 h…
- GSM7473390 HEK293WT, IgG, 6 h at 32°C, replicate 1 HEK293WT, IgG, 6 h at 3…
- GSM7473391 HEK293WT, H3K36me3, 6 h at 32°C, replicate 2 HEK293WT, H3K36me3, 6 h…
- GSM7473392 HEK293WT, IgG, 6 h at 32°C, replicate 2 HEK293WT, IgG, 6 h at 3…
- GSM7473393 HEK293WT, H3K36me3, 6 h at 32°C, replicate 3 HEK293WT, H3K36me3, 6 h…
- GSM7473394 HEK293WT, IgG, 6 h at 32°C, replicate 3 HEK293WT, IgG, 6 h at 3…
- GSM7473395 HEK293WT, H3K36me3, 37°C, replicate 1 HEK293WT, H3K36me3, 37°…
- GSM7473396 HEK293WT, IgG, 37°C, replicate 1 HEK293WT, IgG, 37°C,
- GSM7473397 HEK293WT, H3K36me3, 37°C, replicate 2 HEK293WT, H3K36me3, 37°…
- GSM7473398 HEK293WT, IgG, 37°C, replicate 2 HEK293WT, IgG, 37°C,
- GSM7473399 HEK293WT, H3K36me3, 37°C, replicate 3 HEK293WT, H3K36me3, 37°…
- GSM7473400 HEK293WT, IgG, 37°C, replicate 3 HEK293WT, IgG, 37°C,
- GSM7473401 hNPC, H3K4me3, 6 h at 32°C, replicate 1 hNPC, H3K4me3, 6 h at 3…
- GSM7473402 hNPC, H3K9me3, 6 h at 32°C, replicate 1 hNPC, H3K9me3, 6 h at 3…
- GSM7473403 hNPC, H3K27me3, 6 h at 32°C, replicate 1 hNPC, H3K27me3, 6 h at …
- GSM7473404 hNPC, H3K36me3, 6 h at 32°C, replicate 1 hNPC, H3K36me3, 6 h at …
- GSM7473405 hNPC, H4K20me3, 6 h at 32°C, replicate 1 hNPC, H4K20me3, 6 h at …
- GSM7473406 hNPC, IgG, 6 h at 32°C, replicate 1 hNPC, IgG, 6 h at 32°C,
- GSM7473407 hNPC, SMYD5, 6 h at 32°C, replicate 1 hNPC, SMYD5, 6 h at 32°…
- GSM7473408 hNPC, H3K4me3, 37°C, replicate 1 hNPC, H3K4me3, 37°C,
- GSM7473409 hNPC, H3K9me3, 37°C, replicate 1 hNPC, H3K9me3, 37°C,
- GSM7473410 hNPC, H3K27me3, 37°C, replicate 1 hNPC, H3K27me3, 37°C,
- GSM7473411 hNPC, H3K36me3, 37°C, replicate 1 hNPC, H3K36me3, 37°C,
- GSM7473412 hNPC, H4K20me3, 37°C, replicate 1 hNPC, H4K20me3, 37°C,
- GSM7473413 hNPC, IgG, 37°C, replicate 1 hNPC, IgG, 37°C,
- GSM7473414 hNPC, SMYD5, 37°C, replicate 1 hNPC, SMYD5, 37°C,
- GSM7473415 hNPC, H3K4me3, 6 h at 32°C, replicate 2 hNPC, H3K4me3, 6 h at 3…
- GSM7473416 hNPC, H3K9me3, 6 h at 32°C, replicate 2 hNPC, H3K9me3, 6 h at 3…
- GSM7473417 hNPC, H3K27me3, 6 h at 32°C, replicate 2 hNPC, H3K27me3, 6 h at …
- GSM7473418 hNPC, H3K36me3, 6 h at 32°C, replicate 2 hNPC, H3K36me3, 6 h at …
- GSM7473419 hNPC, H4K20me3, 6 h at 32°C, replicate 2 hNPC, H4K20me3, 6 h at …
- GSM7473420 hNPC, IgG, 6 h at 32°C, replicate 2 hNPC, IgG, 6 h at 32°C,
- GSM7473421 hNPC, SMYD5, 6 h at 32°C, replicate 2 hNPC, SMYD5, 6 h at 32°…
+ 87 more — browse all 127 samples with per-sample file links →
- GSE290623 Opposing functions of distinct regulatory T cell subsets in colorectal cancer 142 samples shares regulator
- GSE266750 GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer 75 samples shares regulator
- GSE97179 Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex 6172 samples shares regulator
- GSE288995 The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health 58 samples shares regulator
- GSE256246 Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function. 132 samples shares regulator
- GSE286473 FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry 95 samples shares regulator
- GSE292300 A core transcriptional regulatory circuitry controls super-enhancer-driven activation of LGR5 in colorectal cancer: ChIP-seq 76 samples shares regulator
- GSE256232 Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq 67 samples shares regulator
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.