Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs
RNA-seq (gene expression) · mouse · 68 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 68 samples: 68 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Compensatory growth and recovery of cartilage cytoarchitecture after transient cell death in fetal mouse limbsNature communications · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE235779_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA987611 and SRA study SRP445978. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 68 sample titles: 68 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7509338 Left Cartilage 478 Exp Nov_2021 [478L_S1_L001]
- GSM7509339 Right Cartilage 478 Exp Nov_2021 [478R_S2_L001]
- GSM7509340 Left Cartilage 473 Ctrl Nov_2021 [473L_S3_L001]
- GSM7509341 Right Cartilage 473 Ctrl Nov_2021 [473R_S4_L001]
- GSM7509342 Left Cartilage 474 Exp Nov_2021 [474L_S5_L001]
- GSM7509343 Right Cartilage 474 Exp Nov_2021 [474R_S6_L001]
- GSM7509344 Left Cartilage 479 Ctrl Nov_2021 [479L_S7_L001]
- GSM7509345 Right Cartilage 479 Ctrl Nov_2021 [479R_S8_L001]
- GSM7509346 Left Cartilage 480 Exp Nov_2021 [480L_S9_L001]
- GSM7509347 Right Cartilage 480 Exp Nov_2021 [480R_S10_L001]
- GSM7509348 Left Cartilage 673 Exp Nov_2021 [673L_S14_L001]
- GSM7509349 Right Cartilage 673 Exp Nov_2021 [673R_S15_L001]
- GSM7509350 Left Cartilage 674 Exp Nov_2021 [674L_S16_L001]
- GSM7509351 Right Cartilage 674 Exp Nov_2021 [674R_S17_L001]
- GSM7509352 Left Cartilage 675 Ctrl Nov_2021 [675L_S18_L001]
- GSM7509353 Right Cartilage 675 Ctrl Nov_2021 [675R_S19_L001]
- GSM7509354 Left Cartilage 676 Ctrl Nov_2021 [676L_S20_L001]
- GSM7509355 Right Cartilage 676 Ctrl Nov_2021 [676R_S21_L001]
- GSM7509356 Left Cartilage 677 Ctrl Nov_2021 [677L_S22_L001]
- GSM7509357 Right Cartilage 677 Ctrl Nov_2021 [677R_S23_L001]
- GSM7509358 Left Cartilage 680 Exp Nov_2021 [680L_S11_L001]
- GSM7509359 Right Cartilage 680 Exp Nov_2021 [680R_S13_L001]
- GSM7509360 None Cartilage Dahup None Nov_2021 [Dahup149_S12_L001]
- GSM7509361 None Cartilage Dahup None Nov_2021 [Dahup150_S24_L001]
- GSM7509362 Left Cartilage 399 Exp Sept_2021 [399L_S11_L002]
- GSM7509363 Left Cartilage 399 Exp Sept_2021 [399L_S11_L001]
- GSM7509364 Right Cartilage 399 Exp Sept_2021 [399R_S12_L001]
- GSM7509365 Right Cartilage 399 Exp Sept_2021 [399R_S12_L002]
- GSM7509366 Left Cartilage 400 Ctrl Sept_2021 [400L_S13_L002]
- GSM7509367 Left Cartilage 400 Ctrl Sept_2021 [400L_S13_L001]
- GSM7509368 Right Cartilage 400 Ctrl Sept_2021 [400R_S14_L001]
- GSM7509369 Right Cartilage 400 Ctrl Sept_2021 [400R_S14_L002]
- GSM7509370 Left Cartilage 401 Exp Sept_2021 [401L_S15_L001]
- GSM7509371 Left Cartilage 401 Exp Sept_2021 [401L_S15_L002]
- GSM7509372 Right Cartilage 401 Exp Sept_2021 [401R_S16_L002]
- GSM7509373 Right Cartilage 401 Exp Sept_2021 [401R_S16_L001]
- GSM7509374 Left Cartilage 481 Exp Sept_2021 [481L_S17_L001]
- GSM7509375 Left Cartilage 481 Exp Sept_2021 [481L_S17_L002]
- GSM7509376 Right Cartilage 481 Exp Sept_2021 [481R_S18_L001]
- GSM7509377 Right Cartilage 481 Exp Sept_2021 [481R_S18_L002]
+ 28 more — browse all 68 samples with per-sample file links →
- GSE256518 Partial beta cell loss induces transient compensatory proliferation II 34 samples shares compensatory, transient
- GSE260758 PARP 1 inhibition mediates a switch from cell death to transient senescence improving repair from acute oxidative injury 16 samples shares transient, death
- GSE256517 Partial beta cell loss induces transient compensatory proliferation I 12 samples shares compensatory, transient
- GSE295431 Targeting Mediator MED23 inhibits HCC development by inhibiting compensatory proliferation and promoting ROS-mediated cell death [RNA-Seq] 8 samples shares compensatory, death
- GSE317803 Mild SARS-CoV-2 maternal infection in mice induces transient offspring neurodevelopmental aberrance 140 samples shares transient
- GSE261066 Transient promoter interactions modulate developmental gene activation [RNA-Seq] 79 samples shares transient
- GSE298401 A Transient Increase in Cardiomyocyte Protein O-GlcNAcylation Enhances Susceptibility to Pressure Overload-Induced Cardiac Remodeling 40 samples shares transient
- GSE265835 The tissue-resident regulatory T cell pool is shaped by transient multi-tissue migration and a conserved residency program. Bulk RNA-Seq profiling of mouse tissue Tregs. 40 samples shares transient
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.