miR184 and miR499 in HSPC proliferation and differentiation
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 × Control vs 3 × mir184 vs 3 × mir499Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- miR-499 in Platelet-Derived Extracellular Vesicles Augments Inflammatory Cell Generation and Cardiac Remodeling After Myocardial InfarctionCirculation · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE236544_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA991551 and SRA study SRP447502. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 3 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7549740 Control_1 Control
- GSM7549741 Control_2 Control
- GSM7549742 Control_3 Control
- GSM7549743 mir184_1 mir184
- GSM7549744 mir184_2 mir184
- GSM7549745 mir184_3 mir184
- GSM7549746 Control_4 Control
- GSM7549747 Control_5 Control
- GSM7549748 Control_6 Control
- GSM7549749 mir499_1 mir499
- GSM7549750 mir499_2 mir499
- GSM7549751 mir499_3 mir499
- GSE261266 TPO stimulation midulates gene expression of iKMT2A-MLLT3 HSPC 34 samples shares hspc
- GSE274860 RNA sequestration in P-bodies sustains myeloid leukemia [HSPC_RNAseq] 24 samples shares hspc
- GSE280510 scRNAseq and CITEseq of aged HSPCs derived from FlkSwitch mouse model 24 samples shares hspc
- GSE215003 Impact of autoimmune inflammation on HSPC and monocyte gene expression 24 samples shares hspc
- GSE326123 Edited HSPCs rescue frataxin deficiency and inflammation-driven neurologic, cardiac and pancreatic pathology in Friedreich’s ataxia 15 samples shares hspc
- GSE218518 Transcriptome analysis to compare alternative splicing between control and Ahed-deficient hematopoietic stem and progenitor cells (HSPCs) [RNA-Seq] 12 samples shares hspc
- GSE255100 Metformin reduces the competitive advantage of Dnmt3aR878H HSPCs [BulkRNA] 12 samples shares hspc
- GSE235693 Leukemic initiation in Jam-C-deficient HSPC reveals AP-1/TNF- gene expression signature as a biomarker for AML 12 samples shares hspc
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.