Transcriptional profiling of liver biopsies of precancerous viral hepatitis patients: Validation cohort

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA994586 and SRA study SRP449443. Searching any of these in the dataset finder brings you back here.

Supports a between-group comparison across 50 samples.

How we read this: 1 replicated groups read from 50 sample titles; they account for 50 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

• GSM7610095 Patient VX001 Patient VX
• GSM7610096 Patient VX002 Patient VX
• GSM7610097 Patient VX003 Patient VX
• GSM7610098 Patient VX004 Patient VX
• GSM7610099 Patient VX005 Patient VX
• GSM7610100 Patient VX007 Patient VX
• GSM7610101 Patient VX008 Patient VX
• GSM7610102 Patient VX011 Patient VX
• GSM7610103 Patient VX013 Patient VX
• GSM7610104 Patient VX014 Patient VX
• GSM7610105 Patient VX015 Patient VX
• GSM7610106 Patient VX016 Patient VX
• GSM7610107 Patient VX018 Patient VX
• GSM7610108 Patient VX019 Patient VX
• GSM7610109 Patient VX020 Patient VX
• GSM7610110 Patient VX021 Patient VX
• GSM7610111 Patient VX022 Patient VX
• GSM7610112 Patient VX023 Patient VX
• GSM7610113 Patient VX024 Patient VX
• GSM7610114 Patient VX025 Patient VX
• GSM7610115 Patient VX026 Patient VX
• GSM7610116 Patient VX027 Patient VX
• GSM7610117 Patient VX028 Patient VX
• GSM7610118 Patient VX029 Patient VX
• GSM7610119 Patient VX032 Patient VX
• GSM7610120 Patient VX033 Patient VX
• GSM7610121 Patient VX034 Patient VX
• GSM7610122 Patient VX035 Patient VX
• GSM7610123 Patient VX036 Patient VX
• GSM7610124 Patient VX037 Patient VX
• GSM7610125 Patient VX038 Patient VX
• GSM7610126 Patient VX039 Patient VX
• GSM7610127 Patient VX040 Patient VX
• GSM7610128 Patient VX041 Patient VX
• GSM7610129 Patient VX042 Patient VX
• GSM7610130 Patient VX043 Patient VX
• GSM7610131 Patient VX044 Patient VX
• GSM7610132 Patient VX045 Patient VX
• GSM7610133 Patient VX046 Patient VX
• GSM7610134 Patient VX047 Patient VX

+ 10 more — browse all 50 samples with per-sample file links →

• GSE237330 Transcriptional profiling of liver biopsies of precancerous viral hepatitis patients: Training cohort 56 samples shares precancerous, hepatitis, biopsies, cohort, liver, viral
• GSE237332 Transcriptional profiling of liver biopsies of precancerous viral hepatitis patients 106 samples shares precancerous, hepatitis, biopsies, liver, viral
• GSE318225 Development of an Optimized Epigenetic Silencer to Transcriptionally Inactivate Viral DNA in Chronic Hepatitis B [RNAseq] 218 samples shares hepatitis, viral
• GSE268309 Transcriptional analysis of metastatic hormone-naïve prostate cancer primary tumour biopsies reveals a relevant role for SOX11 in prostate cancer cell dissemination [Validation dataset] 32 samples shares validation, biopsies
• GSE267834 Hepatitis C Virus-induced Differential Transcriptional Traits in Host Cells After Persistent Infection Elimination by Direct-Acting Antivirals In Cell Culture 28 samples shares hepatitis, viral
• GSE281797 Transcriptomic profiles of liver biopsies in obese patients with metabolic dysfunction-associated steatotic liver disease 94 samples shares biopsies, liver
• GSE294705 High-frequency recurrence index for predicting multiple recurrences in non-muscle-invasive bladder cancer (Validation cohort) 94 samples shares validation, cohort
• GSE303271 RNA-seq of liver biopsies from patients with pediatric autoimmune liver disease 64 samples shares biopsies, liver

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