Diverse somatic mutation patterns and pathway alterations in human cancers
Expression microarray · human · 526 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Prostate cancerThis series is part of our curated briefing on it.
- Samples
- 526 samples: 251 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE23768_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA130735. Searching any of these in the dataset finder brings you back here.
How we read this: Read from the first 400 of 526 sample titles: 251 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM415225 breast tumor 1
- GSM415226 breast tumor 10
- GSM415227 breast tumor 11
- GSM415228 breast tumor 12
- GSM415229 breast tumor 13
- GSM415230 breast tumor 14
- GSM415231 breast tumor 15
- GSM415232 breast tumor 16
- GSM415233 breast tumor 17
- GSM415234 breast tumor 18
- GSM415235 breast tumor 19
- GSM415236 breast tumor 2
- GSM415237 breast tumor 20
- GSM415238 breast tumor 21
- GSM415239 breast tumor 22
- GSM415240 breast tumor 23
- GSM415241 breast tumor 24
- GSM415242 breast tumor 25
- GSM415243 breast tumor 26
- GSM415244 breast tumor 27
- GSM415245 breast tumor 28
- GSM415246 breast tumor 29
- GSM415247 breast tumor 3
- GSM415248 breast tumor 30
- GSM415249 breast tumor 31
- GSM415250 breast tumor 32
- GSM415251 breast tumor 33
- GSM415252 breast tumor 34
- GSM415253 breast tumor 35
- GSM415254 breast tumor 36
- GSM415255 breast tumor 37
- GSM415256 breast tumor 38
- GSM415257 breast tumor 39
- GSM415258 breast tumor 4
- GSM415259 breast tumor 40
- GSM415260 breast tumor 41
- GSM415261 breast tumor 42
- GSM415262 breast tumor 43
- GSM415263 breast tumor 44
- GSM415264 breast tumor 45
+ 486 more — browse all 526 samples with per-sample file links →
- GSE71008 Plasma extracellular RNA profiles in healthy and cancer patients 192 samples same disease briefing
- GSE115501 RNA sequencing on circulating tumor cells from prostate cancer patients 136 samples same disease briefing
- GSE120181 Human prostate cancer cell line, 22Rv1: Control vs. luteolin treatment 2 samples same disease briefing
- GSE222467 The RNA binding proteins LARP4A and LARP4B promote tumour growth and metastasis in prostate cancer and osteosarcoma 12 samples same disease briefing
- GSE242541 ONECUT2 is a druggable driver of luminal to basal breast cancer plasticity 12 samples same disease briefing
- GSE300947 A novel six-biomarker panel identified from male breast cancer-associated fibroblasts demonstrates prognostic power for prostate tumors 6 samples same disease briefing
- GSE338521 Somatic mutations reveal the ontogeny of microglia in human aging 36 samples shares mutation, somatic
- GSE338484 Somatic mutations reveal the ontogeny of microglia in human aging [snATAC-seq] 29 samples shares mutation, somatic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.