ABI1 regulates transcriptional activity of Androgen Receptor by novel DNA and AR binding mechanism
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 25 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 25 samples: 25 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE238114_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA997974 and SRA study SRP451111. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 25 sample titles: 25 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7658765 LNC-parent-untreated-1_S1_L001_R1_001.fastq.gz
- GSM7658766 LNC-parent-untreated-2_S2_L001_R1_001.fastq.gz
- GSM7658767 LNC-parent-untreated-3_S3_L001_R1_001.fastq.gz
- GSM7658768 LNC-parent-R1881-1_S4_L001_R1_001.fastq.gz
- GSM7658769 LNC-parent-R1881-2_S5_L001_R1_001.fastq.gz
- GSM7658770 LNC-parent-R1881-3_S6_L001_R1_001.fastq.gz
- GSM7658771 LNC-KO15-untreated-1_S7_L001_R1_001.fastq.gz
- GSM7658772 LNC-KO15-untreated-2_S8_L001_R1_001.fastq.gz
- GSM7658773 LNC-KO15-untreated-3_S9_L001_R1_001.fastq.gz
- GSM7658774 LNC-KO15-R1881-1_S10_L001_R1_001.fastq.gz
- GSM7658775 LNC-KO15-R1881-2_S11_L001_R1_001.fastq.gz
- GSM7658776 LNC-KO15-R1881-3_S12_L001_R1_001.fastq.gz
- GSM7658777 LNC-Iso2-untreated-1_S13_L001_R1_001.fastq.gz
- GSM7658778 LNC-Iso2-untreated-2_S14_L001_R1_001.fastq.gz
- GSM7658779 LNC-Iso2-untreated-3_S15_L001_R1_001.fastq.gz
- GSM7658780 LNC-Iso2-R1881-1_S16_L001_R1_001.fastq.gz
- GSM7658781 LNC-Iso2-R1881-2_S17_L001_R1_001.fastq.gz
- GSM7658782 LNC-Iso2-R1881-3_S18_L001_R1_001.fastq.gz
- GSM7658783 0_09XJ_01D6SUNY_LNCaP-Pooled_Input_hs_i45.fastq.gz
- GSM7658784 1_09XB_01D6SUNY_LNCaP-Rescue-1_AR_hs_i96.fastq.gz
- GSM7658785 2_09XC_01D6SUNY_LNCaP-Rescue-2_AR_hs_i40.fastq.gz
- GSM7658786 3_09XD_01D6SUNY_LNCaP-Abi1-KO-1_AR_hs_i43.fastq.gz
- GSM7658787 4_09XE_01D6SUNY_LNCaP-Abi1-KO-2_AR_hs_i44.fastq.gz
- GSM7658788 5_0AF7_01D6SUNY_LNCaP-Rescue-1_Abi1_hs_i82.fastq.gz
- GSM7658789 6_0AF6_01D6SUNY_LNCaP-KO-1_Abi1_hs_i81.fastq.gz
- GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples shares activity, androgen, receptor
- GSE211164 Central role of SUMOylation in the regulation of chromatin interactions and transcriptional outputs of androgen receptor in prostate cancer cells 64 samples shares androgen, receptor
- GSE284519 TRIM33 loss reduces Androgen Receptor transcriptional output and H2BK120 ubiquitination [ChIP-seq] 93 samples shares androgen, receptor
- GSE242941 Transcriptional profiling of skin cancer NK cells reveals the elevated glucocorticoid receptor activity alters their pro-inflammatory features. 36 samples shares activity, receptor
- GSE222196 Treatment of prostate cancer cell lines with Androgen Receptor and Receptor Tyrosine Kinase inhibitors 246 samples shares androgen, receptor
- GSE280267 Glycine Receptor Activity in β Cells Is Downregulated in Type 2 Diabetes and After High Glucose Culture 199 samples shares activity, receptor
- GSE252902 Increased chromatin accessibility drives transition to androgen receptor splice variant dependence in castration-resistant prostate cancer 130 samples shares androgen, receptor
- GSE314304 IL-11 receptor is a novel target for drug development with pharmacological activity in fibro-inflammatory disease 96 samples shares activity, receptor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.