Degenerative and regenerative peripheral processes are associated with persistent painful chemotherapy-induced neuropathies in males and females
RNA-seq (gene expression) · mouse · 53 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 53 samples: 16 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Degenerative and regenerative peripheral processes are associated with persistent painful chemotherapy-induced neuropathies in males and femalesScientific reports · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240708_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1004649 and SRA study SRP454696. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 53 samples.
How we read this: 16 replicated groups read from 53 sample titles; they account for 53 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7708056 DRG bulk RNA-seq 1d post-PTX male, rep1 DRG bulk RNA-seq 1d pos…
- GSM7708057 DRG bulk RNA-seq 1d post-PTX male, rep2 DRG bulk RNA-seq 1d pos…
- GSM7708058 DRG bulk RNA-seq 1d post-PTX male, rep3 DRG bulk RNA-seq 1d pos…
- GSM7708059 DRG bulk RNA-seq 1d post-PTX male, rep4 DRG bulk RNA-seq 1d pos…
- GSM7708060 DRG bulk RNA-seq 16d post-PTX male, rep1 DRG bulk RNA-seq 16d po…
- GSM7708061 DRG bulk RNA-seq 16d post-PTX male, rep2 DRG bulk RNA-seq 16d po…
- GSM7708062 DRG bulk RNA-seq 16d post-PTX male, rep3 DRG bulk RNA-seq 16d po…
- GSM7708063 DRG bulk RNA-seq 16d post-PTX male, rep4 DRG bulk RNA-seq 16d po…
- GSM7708064 DRG bulk RNA-seq 31d post-PTX male, rep1 DRG bulk RNA-seq 31d po…
- GSM7708065 DRG bulk RNA-seq 31d post-PTX male, rep2 DRG bulk RNA-seq 31d po…
- GSM7708066 DRG bulk RNA-seq 31d post-PTX male, rep3 DRG bulk RNA-seq 31d po…
- GSM7708067 DRG bulk RNA-seq 31d post-PTX male, rep4 DRG bulk RNA-seq 31d po…
- GSM7708068 DRG bulk RNA-seq 1d post-PTX female, rep1 DRG bulk RNA-seq 1d pos…
- GSM7708069 DRG bulk RNA-seq 1d post-PTX female, rep2 DRG bulk RNA-seq 1d pos…
- GSM7708070 DRG bulk RNA-seq 1d post-PTX female, rep3 DRG bulk RNA-seq 1d pos…
- GSM7708071 DRG bulk RNA-seq 16d post-PTX female, rep1 DRG bulk RNA-seq 16d po…
- GSM7708072 DRG bulk RNA-seq 16d post-PTX female, rep2 DRG bulk RNA-seq 16d po…
- GSM7708073 DRG bulk RNA-seq 16d post-PTX female, rep3 DRG bulk RNA-seq 16d po…
- GSM7708074 DRG bulk RNA-seq 31d post-PTX female, rep1 DRG bulk RNA-seq 31d po…
- GSM7708075 DRG bulk RNA-seq 31d post-PTX female, rep2 DRG bulk RNA-seq 31d po…
- GSM7708076 DRG bulk RNA-seq 31d post-PTX female, rep3 DRG bulk RNA-seq 31d po…
- GSM7708077 Paw skin bulk RNA-seq 1d post-PTX male, rep1 Paw skin bulk RNA-seq 1…
- GSM7708078 Paw skin bulk RNA-seq 1d post-PTX male, rep2 Paw skin bulk RNA-seq 1…
- GSM7708079 Paw skin bulk RNA-seq 1d post-PTX male, rep3 Paw skin bulk RNA-seq 1…
- GSM7708080 Paw skin bulk RNA-seq 1d post-PTX male, rep4 Paw skin bulk RNA-seq 1…
- GSM7708081 Paw skin bulk RNA-seq 16d post-PTX male, rep1 Paw skin bulk RNA-seq 1…
- GSM7708082 Paw skin bulk RNA-seq 16d post-PTX male, rep2 Paw skin bulk RNA-seq 1…
- GSM7708083 Paw skin bulk RNA-seq 16d post-PTX male, rep3 Paw skin bulk RNA-seq 1…
- GSM7708084 Paw skin bulk RNA-seq 31d post-PTX male, rep1 Paw skin bulk RNA-seq 3…
- GSM7708085 Paw skin bulk RNA-seq 31d post-PTX male, rep2 Paw skin bulk RNA-seq 3…
- GSM7708086 Paw skin bulk RNA-seq 31d post-PTX male, rep3 Paw skin bulk RNA-seq 3…
- GSM7708087 Paw skin bulk RNA-seq 31d post-PTX male, rep4 Paw skin bulk RNA-seq 3…
- GSM7708088 Paw skin bulk RNA-seq 1d post-PTX female, rep1 Paw skin bulk RNA-seq 1…
- GSM7708089 Paw skin bulk RNA-seq 1d post-PTX female, rep2 Paw skin bulk RNA-seq 1…
- GSM7708090 Paw skin bulk RNA-seq 1d post-PTX female, rep3 Paw skin bulk RNA-seq 1…
- GSM7708091 Paw skin bulk RNA-seq 16d post-PTX female, rep1 Paw skin bulk RNA-seq 1…
- GSM7708092 Paw skin bulk RNA-seq 16d post-PTX female, rep2 Paw skin bulk RNA-seq 1…
- GSM7708093 Paw skin bulk RNA-seq 16d post-PTX female, rep3 Paw skin bulk RNA-seq 1…
- GSM7708094 Paw skin bulk RNA-seq 31d post-PTX female, rep1 Paw skin bulk RNA-seq 3…
- GSM7708095 Paw skin bulk RNA-seq 31d post-PTX female, rep2 Paw skin bulk RNA-seq 3…
+ 13 more — browse all 53 samples with per-sample file links →
- GSE333360 Distinct neuroinflammatory effects of individual chemotherapeutics shape chemotherapy-induced peripheral neuropathy in a novel mouse model of CVAD combination regimen. 30 samples shares chemotherapy-induced, peripheral
- GSE309119 Leukocyte-intrinsic ER stress responses contribute to chemotherapy-induced peripheral neuropathy. 16 samples shares chemotherapy-induced, peripheral
- GSE288503 Secreted chemokines and transcriptomic analyses reveal diverse inflammatory and degenerative processes in the intervertebral disc of the STZ-HFD mouse model of Type 2 diabetes 14 samples shares degenerative, processes
- GSE249275 Fucoidan reduces NETs accumulation and alleviates chemotherapy-induced peripheral neuropathy 6 samples shares chemotherapy-induced, peripheral
- GSE342321 Senescent Fibroblast-derived SASP Drives Chemotherapy-Induced Peripheral Neuropathy 4 samples shares chemotherapy-induced, peripheral
- GSE147136 Regenerative landscape of intestinal organoids 94 samples shares regenerative
- GSE264258 Hippocampal CA1 Pyramidal Neurons Display Sublayer and Circuitry Dependent Degenerative Expression Profiles in Aged Female Down Syndrome Mice 66 samples shares degenerative
- GSE151088 miR-375 Regulates Intestinal Crypt Cell Landscape, Proliferation, and Regenerative Capacity 54 samples shares regenerative
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.