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CRL4-DCAF15 control of cohesin dynamics sustains cell proliferation [ChIP-seq]

GSE241579 Homo sapiens Genome binding/occupancy profiling by high throughput sequencing 5 samples Submitted 2024/05/22 Platform GPL30173
Summary
The CRL4-DCAF15 E3 ubiquitin ligase complex is targeted by the aryl-sulfonamide molecular glues, leading to neo-substrate recruitment, ubiquitination, and proteasomal degradation. However, the physiological function of DCAF15 remains unknown. Using a domain-focused genetic screening approach, we reveal DCAF15 as an acute myeloid leukemia (AML)-biased dependency. Loss of DCAF15 results in suppression of AML through compromised replication fork integrity and consequent accumulation of DNA damage. Accordingly, DCAF15 loss sensitizes AML to replication stress-inducing therapeutics. Mechanistically, we discover that DCAF15 directly interacts with the SMC1A protein of the cohesin complex and destabilizes the cohesin regulatory factors PDS5A and CDCA5. Loss of PDS5A and CDCA5 removal precludes cohesin acetylation on chromatin, resulting in uncontrolled chromatin loop extrusion, defective DNA replication, and apoptosis. Collectively, our findings uncover an endogenous, cell autonomous function of DCAF15 in sustaining AML proliferation through post-translational control of cohesin dynamics.
Published in
DCAF15 control of cohesin dynamics sustains acute myeloid leukemia
Grothusen GP, Chang R, Cao Z et al. · Nature communications 2024 · PMID 38961054 · doi:10.1038/s41467-024-49882-x
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Direct links to NCBI, no account and no request form: the whole study as GSE241579_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 5 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1008730 and SRA study SRP456810. Searching any of these in the dataset finder brings you back here.

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