Molecular and functional profiling of cell diversity and identity in the lateral superior olive, an auditory brainstem center with ascending and descending projections
RNA-seq (gene expression) · mouse · 96 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 96 samples: 86 × cell vs 10 × NCGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Molecular and functional profiling of cell diversity and identity in the lateral superior olive, an auditory brainstem center with ascending and descending projectionsFrontiers in cellular neuroscience · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE241761_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1009815 and SRA study SRP457113. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 96 samples.
How we read this: 2 replicated groups read from 96 sample titles; they account for 96 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7734970 cell_10 cell
- GSM7734971 cell_11 cell
- GSM7734972 cell_12 cell
- GSM7734973 cell_13 cell
- GSM7734974 cell_14 cell
- GSM7734975 cell_15 cell
- GSM7734976 cell_16 cell
- GSM7734977 cell_17 cell
- GSM7734978 cell_18 cell
- GSM7734979 cell_19 cell
- GSM7734980 cell_1 cell
- GSM7734981 cell_20 cell
- GSM7734982 cell_21 cell
- GSM7734983 cell_22 cell
- GSM7734984 cell_23 cell
- GSM7734985 cell_24 cell
- GSM7734986 cell_25 cell
- GSM7734987 cell_26 cell
- GSM7734988 cell_27 cell
- GSM7734989 cell_28 cell
- GSM7734990 cell_29 cell
- GSM7734991 cell_2 cell
- GSM7734992 cell_30 cell
- GSM7734993 cell_31 cell
- GSM7734994 cell_32 cell
- GSM7734995 cell_33 cell
- GSM7734996 cell_34 cell
- GSM7734997 cell_35 cell
- GSM7734998 cell_36 cell
- GSM7734999 cell_37 cell
- GSM7735000 cell_38 cell
- GSM7735001 cell_39 cell
- GSM7735002 cell_3 cell
- GSM7735003 cell_40 cell
- GSM7735004 cell_41 cell
- GSM7735005 cell_42 cell
- GSM7735006 cell_43 cell
- GSM7735007 cell_44 cell
- GSM7735008 cell_45 cell
- GSM7735009 cell_46 cell
+ 56 more — browse all 96 samples with per-sample file links →
- GSE298730 An integrated transcription factor framework for Treg identity and diversity 5 samples shares diversity, identity
- GSE293874 Anchored screening identifies transcription factor blueprints underlying dendritic cell diversity and subset-specific anti-tumor immunity [mouse bulk RNA-seq] 167 samples shares diversity
- GSE287451 Age-related transcriptional diversity in multiple skeletal muscles of mice 86 samples shares diversity
- GSE311155 Age- and Sex- Driven Transcriptional and Metabolic Diversity in Myeloid-Derived Suppressor Cells After Mouse Sepsis 57 samples shares diversity
- GSE271029 Mex3a-dependent post-transcriptional silencing assures olfactory receptor diversity and axon guidance specificity [RNA-Seq] 46 samples shares diversity
- GSE310829 Non-reciprocal callosal projections and input gradients underlie interhemispheric communication in binocular visual cortex 41 samples shares projections
- GSE283608 Broccoli consumption alters microbial diversity, host and bacterial gene expression in mice fed a Total Western Diet 40 samples shares diversity
- GSE283143 Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the proximal to distal transcriptome 36 samples shares diversity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.