Olfactory neuroblastoma mimics molecular subtypes and lineage trajectories of small cell lung cancer
Expression microarray · human · 103 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Small cell lung cancerThis series is part of our curated briefing on it.
- Samples
- 103 samples: 101 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
- Paper
- Olfactory neuroblastoma mimics molecular heterogeneity and lineage trajectories of small-cell lung cancerCancer cell · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE244123_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA1021254 and SRA study SRP463302. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 4 samples read as cases, 10 as controls.
How we read this: Read from 103 sample titles: 101 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7807444 Negative control blank
- GSM7807445 1.1_Ki67_CD45_reg3-CD45
- GSM7807446 1.1_Ki67_CD45_reg3-Ki-67
- GSM7807447 1.1_Ki67_reg_2-Ki-67
- GSM7807448 1.1_Neg_reg1-negative
- GSM7807449 1.1_TUJ1_Neg_reg2-negative
- GSM7807450 1.1_TUJ1_Neg_reg2-Tuj1
- GSM7807451 1.1_TUJ1_reg1-Tuj1
- GSM7807452 1.1_TUJ1_reg3-negative
- GSM7807453 1.1_TUJ1_reg3-Tuj1
- GSM7807454 1.2_CD45_Neg_reg2-negative
- GSM7807455 1.2_Ki67_reg1-Ki-67
- GSM7807456 1.2_TUJ1_reg1-Tuj1
- GSM7807457 1.2_TUJ1_reg2-Tuj1
- GSM7807458 1.3_TUJ1_reg1-Tuj1
- GSM7807459 1.3_TUJ1_reg2-Tuj1
- GSM7807460 1.3_TUJ1_reg3-Tuj1
- GSM7807461 2.1_reg1_CD45-CD45
- GSM7807462 2.1_reg1_Ki67-Ki-67
- GSM7807463 2.1_reg1_Tuj1-Tuj1
- GSM7807464 2.1_reg2_CD45_Ki67_Tuj1-CD45
- GSM7807465 2.1_reg2_CD45_Ki67_Tuj1-Ki-67
- GSM7807466 2.1_reg2_CD45_Ki67_Tuj1-Tuj1
- GSM7807467 2.2_normal1_Tuj1_1-Tuj1
- GSM7807468 2.2_normal2_stroma-negative
- GSM7807469 2.2_normal2_Tuj1-Tuj1
- GSM7807470 2.2_reg1_CD45_Tuj1-CD45
- GSM7807471 2.2_reg1_CD45_Tuj1-Tuj1
- GSM7807472 2.2_reg2_CD45_Tuj1-CD45
- GSM7807473 2.2_reg2_CD45_Tuj1-Tuj1
- GSM7807474 2.2_reg3_CD45_Tuj1-CD45
- GSM7807475 2.2_reg3_CD45_Tuj1-Tuj1
- GSM7807476 2.2_reg3_normal_Tuj1-Tuj1
- GSM7807477 2.2_reg4_Ki67-Ki-67
- GSM7807478 2.3_reg1_Ki67-Ki-67
- GSM7807479 2.3_reg1_Tuj1-Tuj1
- GSM7807480 2.3_reg2_Ki67-Ki-67
- GSM7807481 2.3_reg2_Tuj1-Tuj1
- GSM7807482 3.1_reg1_CD45-CD45
- GSM7807483 3.1_reg1_Ki67-Ki-67
+ 63 more — browse all 103 samples with per-sample file links →
- GSE319155 Single-cell profiling of tumor lineage plasticity and the immune microenvironment in transformed small cell lung cancer 7 samples same disease briefing · shares lineage, small, lung
- GSE249362 Non-Canonical BAF and mSWI/SNF Regulates POU2F3 and are Selective Targetable Dependencies for POU2F3-Positive Small Cell Lung Cancer 125 samples same disease briefing · shares small, lung
- GSE208446 Small cell lung cancer responds to inhibition of Jumonji enzyme in vitro and in vivo 90 samples same disease briefing · shares small, lung
- GSE244947 NOTCH1 reverses immune suppression in small cell lung cancer through reactivation of STING 87 samples same disease briefing · shares small, lung
- GSE255095 An in vivo screening platform using PDX models reveals KEAP1, USP22 and other drivers of chemoresistance in small cell lung cancer 67 samples same disease briefing · shares small, lung
- GSE281525 RNA-sequence data of clinically never-metastatic primary small cell lung cancer cases and small cell lung cancer metastasis cases, FOXA2 knock-down and overexpression in cell lines 61 samples same disease briefing · shares small, lung
- GSE262597 EIF6 conditions drug-tolerant persister-like transdifferentiation in small cell lung carcinoma 56 samples same disease briefing · shares small, lung
- GSE138474 Single-cell analyses reveal increasing intratumoral heterogeneity as an essential component of treatment resistance in small cell lung cancer 43 samples same disease briefing · shares small, lung
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.