Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions

Direct links to NCBI, no account and no request form: the whole study as GSE244845_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 9 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1024992 and SRA study SRP464954. Searching any of these in the dataset finder brings you back here.

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 9 more — browse all 9 samples with per-sample file links →

• GSE316497 Genotype-Epigenome-Phenotype Integration Reveals the Contributions of Peripheral Immune Cells to Bipolar Disorder Pathogenesis, Phenotypic Heterogeneity, and Therapy 1012 samples
• GSE283182 Differential gene expression in leukemia is driven by enhancer heterogeneity 166 samples
• GSE292698 Silencing of BCL11A by Disrupting Enhancer-Dependent Chromatin Insulation 95 samples
• GSE236415 Topological regulation of the estrogen transcriptional response by ZATT-mediated inhibition of TOP2B activity 89 samples
• GSE216843 Hypoxia-induced CTCF mediates alternative splicing via coupling chromatin looping and RNA Pol II pause to promote EMT in breast cancer 18 samples
• GSE236413 Topological regulation of the estrogen transcriptional response by ZATT-mediated inhibition of TOP2B activity [ICE-Seq] 16 samples
• GSE251895 Decoding the Epigenetics and Chromatin Loop Dynamics of Androgen Receptor-Mediated Transcription [HiChIP] 15 samples
• GSE273434 Regulation of somatic hypermutation by higher-order chromatin structure 141 samples

Search all human ChIP / ATAC / CUT&Tag datasets in GEO →