Combinatorial miRNA activity is essential for transition of pluripotent cells into dormancy
Non-coding RNA profiling · mouse · 44 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 44 samples: 14 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE245226_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1027436 and SRA study SRP465030. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 44 samples.
How we read this: 14 replicated groups read from 44 sample titles; they account for 44 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7831302 DGRC8 KO, not paused, replicate 1 DGRC8 KO, not paused,
- GSM7831303 DGRC8 KO, not paused, replicate 2 DGRC8 KO, not paused,
- GSM7831304 DGRC8 KO, not paused, replicate 3 DGRC8 KO, not paused,
- GSM7831305 DGRC8 KO, not paused, replicate 4 DGRC8 KO, not paused,
- GSM7831306 DGRC8 KO, paused, replicate 1 DGRC8 KO, paused,
- GSM7831307 DGRC8 KO, paused, replicate 2 DGRC8 KO, paused,
- GSM7831308 DGRC8 KO, paused, replicate 3 DGRC8 KO, paused,
- GSM7831309 DGRC8 KO, paused, replicate 4 DGRC8 KO, paused,
- GSM7831310 WT, not paused, replicate 1 WT, not paused,
- GSM7831311 WT, not paused, replicate 2 WT, not paused,
- GSM7831312 WT, not paused, replicate 3 WT, not paused,
- GSM7831313 WT, not paused, replicate 4 WT, not paused,
- GSM7831314 WT, paused, replicate 1 WT, paused,
- GSM7831315 WT, paused, replicate 2 WT, paused,
- GSM7831316 WT, paused, replicate 3 WT, paused,
- GSM7831317 WT, paused, replicate 4 WT, paused,
- GSM7838985 Blastocyst-Polar_diapaused_rep1 Blastocyst-Polar_diapau…
- GSM7838986 Blastocyst-Polar_diapaused_rep2 Blastocyst-Polar_diapau…
- GSM7838987 Blastocyst-Polar_diapaused_rep3 Blastocyst-Polar_diapau…
- GSM7838988 Blastocyst-Mural_diapaused_rep1 Blastocyst-Mural_diapau…
- GSM7838989 Blastocyst-Mural_diapaused_rep2 Blastocyst-Mural_diapau…
- GSM7838990 Blastocyst-Mural_diapaused_rep3 Blastocyst-Mural_diapau…
- GSM7838991 Blastocyst-Polar_mTORi_rep1 Blastocyst-Polar_mTORi
- GSM7838992 Blastocyst-Polar_mTORi_rep2 Blastocyst-Polar_mTORi
- GSM7838993 Blastocyst-Polar_mTORi_rep3 Blastocyst-Polar_mTORi
- GSM7838994 Blastocyst-mTORi_diapaused_rep1 Blastocyst-mTORi_diapau…
- GSM7838995 Blastocyst-mTORi_diapaused_rep2 Blastocyst-mTORi_diapau…
- GSM7838996 Blastocyst-mTORi_diapaused_rep3 Blastocyst-mTORi_diapau…
- GSM7838997 Blastocyst-Polar_WT_rep1 Blastocyst-Polar_WT
- GSM7838998 Blastocyst-Polar_WT_rep2 Blastocyst-Polar_WT
- GSM7838999 Blastocyst-Mural_WT_rep1 Blastocyst-Mural_WT
- GSM7839000 Blastocyst-Mural_WT_rep2 Blastocyst-Mural_WT
- GSM7839001 TS WT rep 1 TS WT
- GSM7839002 TS paused 1 TS paused
- GSM7839003 TS WT rep 2 TS WT
- GSM7839004 TS paused 2 TS paused
- GSM7839005 TS WT rep 3 TS WT
- GSM7839006 TS paused 3 TS paused
- GSM7839007 E14 WT rep 1 E14 WT
- GSM7839008 E14 paused 1 E14 paused
+ 4 more — browse all 44 samples with per-sample file links →
- GSE263415 Spatial hepatocyte plasticity of gluconeogenic gene expression and gluconeogenic activity during the metabolic transitions between fed, fasted and starvation states [RNA-Seq] 18 samples shares transition, activity
- GSE304626 The CXCL10/CXCR3 axis is essential for sustaining immunological dormancy in triple-negative breast cancer 12 samples shares essential, dormancy
- GSE333520 The flame retardant triphenyl phosphate induces varying responses in genetically diverse mouse induced pluripotent stem cells 436 samples shares pluripotent
- GSE274544 Single cell profiling reveals three endothelial to hematopoietic transitions with divergent isoform expression landscapes [scRNA-Seq] 1494 samples shares transition
- GSE249630 Modeling T cell temporal response to cancer immunotherapy rationalize development of combinatorial treatments protocols 1372 samples shares combinatorial
- GSE292289 H3K79 methylation and H3K36 trimethylation synergistically regulate gene expression in pluripotent stem cells 94 samples shares pluripotent
- GSE292282 H3K79 methylation and H3K36 trimethylation synergistically regulate gene expression in pluripotent stem cells [RNA-Seq] 44 samples shares pluripotent
- GSE215762 Mettl3-dependent m6A modification is essential for effector differentiation and memory formation of CD8+ T cells 41 samples shares essential
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.