Function of ARID1A during osteoclastogenesis
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 22 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 22 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ARID1A safeguards the canalization of the cell fate decision during osteoclastogenesisNature communications · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE245258_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1027475 and SRA study SRP466057. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 22 more — browse all 22 samples with per-sample file links →
- GSE231933 The chromatin remodeling factor Arid1a cooperates with Jun/Fos to promote osteoclastogenesis by epigenetically upregulating Siglec15 expression 37 samples shares arid1a, osteoclastogenesis
- GSE245253 Function of ARID1A during osteoclastogenesis (ChIP-Seq) 12 samples shares arid1a, osteoclastogenesis
- GSE245255 Function of ARID1A during osteoclastogenesis (RNA-Seq) 8 samples shares arid1a, osteoclastogenesis
- GSE245257 Function of ARID1A during osteoclastogenesis (scRNA-Seq) 2 samples shares arid1a, osteoclastogenesis
- GSE217807 ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity 62 samples shares arid1a
- GSE325094 Cell fate specification during respiratory development requires ARID1A-containing canonical BAF complex activity 4 samples shares arid1a
- GSE212970 Increased genomic instability and reshaping of tissue microenvironment underlie oncogenic properties of Arid1a mutations 31 samples shares arid1a
- GSE269928 Arid1a mediates cell recovery upon gastric injury to prevent tumorigenesis [Multiome] 9 samples shares arid1a
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.