WWOX promotes osteosarcoma development via upregulation of Myc [RNA-Seq]
RNA-seq (gene expression) · mouse · 37 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 37 samples: 10 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- WWOX promotes osteosarcoma development via upregulation of MycCell death & disease · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE245605_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1029059 and SRA study SRP466860. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 37 samples.
How we read this: 10 replicated groups read from 37 sample titles; they account for 37 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7845586 yBM_1 yBM
- GSM7845587 yBM_2 yBM
- GSM7845588 yBM_3 yBM
- GSM7845589 yBM_4 yBM
- GSM7845590 yBM_5 yBM
- GSM7845591 yBM_6 yBM
- GSM7845592 Tumor_1 Tumo
- GSM7845593 BMT_1 BMT
- GSM7845594 Tumor_2 Tumo
- GSM7845595 BMT_2 BMT
- GSM7845596 Tumor_3 Tumo
- GSM7845597 BMT_3 BMT
- GSM7845598 Control_1 Control
- GSM7845599 Control_2 Control
- GSM7845600 Control_3 Control
- GSM7845601 Control_4 Control
- GSM7845602 Control--1 Control
- GSM7845603 Control--2 Control
- GSM7845604 Control--3 Control
- GSM7845605 yBM_SKO_1 yBM_SKO
- GSM7845606 yBM_SKO_2 yBM_SKO
- GSM7845607 yBM_SKO_3 yBM_SKO
- GSM7845608 yBM_DKO_1 yBM_DKO
- GSM7845609 yBM_DKO_2 yBM_DKO
- GSM7845610 yBM_DKO_3 yBM_DKO
- GSM7845611 SKO_T_1 SKO_T
- GSM7845612 SKO_T_2 SKO_T
- GSM7845613 SKO_T_3 SKO_T
- GSM7845614 SKO_BMT_1 SKO_BMT
- GSM7845615 SKO_BMT_2 SKO_BMT
- GSM7845616 SKO_BMT_3 SKO_BMT
- GSM7845617 DKO_T_1 DKO_T
- GSM7845618 DKO_T_2 DKO_T
- GSM7845619 DKO_T_3 DKO_T
- GSM7845620 DKO_BMT_1 DKO_BMT
- GSM7845621 DKO_BMT_2 DKO_BMT
- GSM7845622 DKO_BMT_3 DKO_BMT
- GSE245607 WWOX promotes osteosarcoma development via upregulation of Myc 39 samples shares wwox, osteosarcoma, upregulation, promotes
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.