WWOX promotes osteosarcoma development via upregulation of Myc
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 39 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 39 samples: 10 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- WWOX promotes osteosarcoma development via upregulation of MycCell death & disease · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE245607_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1029051 and SRA study SRP466860. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 37 samples.
How we read this: 10 replicated groups read from 39 sample titles; they account for 37 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7845586 yBM_1 yBM
- GSM7845587 yBM_2 yBM
- GSM7845588 yBM_3 yBM
- GSM7845589 yBM_4 yBM
- GSM7845590 yBM_5 yBM
- GSM7845591 yBM_6 yBM
- GSM7845592 Tumor_1 Tumo
- GSM7845593 BMT_1 BMT
- GSM7845594 Tumor_2 Tumo
- GSM7845595 BMT_2 BMT
- GSM7845596 Tumor_3 Tumo
- GSM7845597 BMT_3 BMT
- GSM7845598 Control_1 Control
- GSM7845599 Control_2 Control
- GSM7845600 Control_3 Control
- GSM7845601 Control_4 Control
- GSM7845602 Control--1 Control
- GSM7845603 Control--2 Control
- GSM7845604 Control--3 Control
- GSM7845605 yBM_SKO_1 yBM_SKO
- GSM7845606 yBM_SKO_2 yBM_SKO
- GSM7845607 yBM_SKO_3 yBM_SKO
- GSM7845608 yBM_DKO_1 yBM_DKO
- GSM7845609 yBM_DKO_2 yBM_DKO
- GSM7845610 yBM_DKO_3 yBM_DKO
- GSM7845611 SKO_T_1 SKO_T
- GSM7845612 SKO_T_2 SKO_T
- GSM7845613 SKO_T_3 SKO_T
- GSM7845614 SKO_BMT_1 SKO_BMT
- GSM7845615 SKO_BMT_2 SKO_BMT
- GSM7845616 SKO_BMT_3 SKO_BMT
- GSM7845617 DKO_T_1 DKO_T
- GSM7845618 DKO_T_2 DKO_T
- GSM7845619 DKO_T_3 DKO_T
- GSM7845620 DKO_BMT_1 DKO_BMT
- GSM7845621 DKO_BMT_2 DKO_BMT
- GSM7845622 DKO_BMT_3 DKO_BMT
- GSM7845623 DKO
- GSM7845624 input
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples shares promotes
- GSE274695 Aging promotes reactivation of the Barr body at distal chromosome regions 175 samples shares promotes
- GSE247454 Brca1 haploinsufficiency promotes early tumor onset and epigenetic alterations in a mouse model of hereditary breast cancer 38 samples shares promotes
- GSE213756 Serine enrichment in tumors promotes regulatory T cell accumulation through sphinganine mediated regulation of c-Fos 32 samples shares promotes
- GSE305975 Basal level of ATF4 promotes T cell readiness for activation-induced proliferation 29 samples shares promotes
- GSE291272 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness [ChIP-seq] 41 samples shares promotes
- GSE228457 IL-7 mediated immunoregulatory feedback loop promotes dampening of immune effector functions by hypoinflammatory monocytes. 305 samples shares promotes
- GSE218178 Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance 183 samples shares promotes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.