Hepatic stellate cells regulate liver fatty acid utilization via plasmalemma vesicle-associated protein
RNA-seq (gene expression) · mouse · 52 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 52 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Hepatic stellate cells regulate liver fatty acid utilization via plasmalemma vesicle-associated proteinCell metabolism · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE246088_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1031260 and SRA study SRP468021. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 52 more — browse all 52 samples with per-sample file links →
- GSE246086 Hepatic stellate cells regulate liver fatty acid utilization via plasmalemma vesicle-associated protein [bulk RNA-seq] 46 samples shares vesicle-associated, utilization, plasmalemma, stellate, regulate, hepatic, protein, liver
- GSE246087 Hepatic stellate cells regulate liver fatty acid utilization via plasmalemma vesicle-associated protein [snRNA-seq] 6 samples shares vesicle-associated, utilization, plasmalemma, stellate, regulate, hepatic, protein, liver
- GSE256377 Hepatic stellate cells control liver zonation and function via R-spondin 3 [bulkRNAseq_mouse_HSCdepleted] 34 samples shares stellate, hepatic, liver
- GSE270404 Foxd1 expression identifies a distinct subset of hepatic stellate cells involved in liver fibrosis 12 samples shares stellate, hepatic, liver
- GSE294603 Purification protocol of hypertrophied hepatic stellate cells from CDAHFD mice liver for their transcriptomic characterization 10 samples shares stellate, hepatic, liver
- GSE245857 Hepatic stellate cell-derived thrombospondin-2 as a novel therapeutic target for liver fibrosis 8 samples shares stellate, hepatic, liver
- GSE313667 Lack of phosphoenolpyruvate carboxykinase 1 in hepatic stellate cells causes liver fibrosis by fueling tricarboxylic acid cycle and increasing glycolysis 8 samples shares stellate, hepatic, liver
- GSE328089 Therapeutic Targeting of AREL1 in Hepatic Stellate Cells Attenuates MASH-related Liver Fibrosis [RNA-Seq] 8 samples shares stellate, hepatic, liver
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.