Optimisation of the self-transcribing active regulatory region sequencing massively parallel reporter assay for the functional interrogation of cis-regulatory regions
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 3 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE247172_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1036562 and SRA study SRP470530. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE330364 A massively parallel reporter assay of MECP2 cis-regulatory elements reveals genetic candidates for male-biased autism 24 samples shares cis-regulatory, regulatory, massively, parallel, reporter
- GSE325670 Promoter mutagenesis and a massively parallel reporter screen of the MAPT locus identifies cis-regulatory elements and genetic variation effects 140 samples shares cis-regulatory, regulatory, massively, parallel, reporter
- GSE324430 Promoter mutagenesis and a massively parallel reporter screen of the MAPT locus identifies cis-regulatory elements and genetic variation effects [RNA-seq] 88 samples shares cis-regulatory, regulatory, massively, parallel, reporter
- GSE261073 ASH1L guards cis-regulatory elements against cyclobutane pyrimidine dimer induction [ChIP-seq] 48 samples shares cis-regulatory, regulatory
- GSE299408 Characterizing heterogeneous cis-regulatory elements in gene regulatory programs associated with breast cancer 38 samples shares cis-regulatory, regulatory
- GSE305063 FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [human_Tconv_ChIP-seq] 38 samples shares cis-regulatory, regulatory
- GSE326324 Transcriptional reprogramming by AP-1-bound cis-regulatory elements drives melanoma development 36 samples shares cis-regulatory, regulatory
- GSE286472 FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [human_Treg_ChIP-seq] 18 samples shares cis-regulatory, regulatory
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.