Cell-in-cell mediated intercellular communication exacerbates the pro-inflammatory progression in asthma
RNA-seq (gene expression) · mouse · 2 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE249259_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1048369 and SRA study SRP475612. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE285364 Intercellular communication between hepatic stellate cells and myofibroblasts mediated by osteopontin and FGF18 3 samples shares intercellular, communication, mediated
- GSE242731 Class switch recombination regulation by extracellular vesicles mediated intercellular epigenomic signaling 48 samples shares intercellular, mediated
- GSE249030 Myostatin regulates energy homeostasis through autocrine- and paracrine-mediated microenvironment communications 13 samples shares communication, mediated
- GSE278711 Effect of conditional deletion of Bmal1 in pancreatic β-cells in modulating transcriptional islet response to STZ-mediated pro-inflammatory injury 12 samples shares pro-inflammatory, mediated
- GSE291028 Inference of secreted protein signaling activities in intercellular communication 10 samples shares intercellular, communication
- GSE222409 Pro-inflammatory diet exacerbates colitis and alters gut microbiota 10 samples shares pro-inflammatory, exacerbates
- GSE229487 Intercellular nanotube-mediated mitochondrial transfer enhances T-cell metabolic fitness and antitumor efficacy 9 samples shares intercellular, mediated
- GSE291091 MSC-dependent intercellular communication: an interactome for skeletal muscle homeostasis and regeneration 8 samples shares intercellular, communication
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.