CCR1 and CCR2 co-expression on monocytes is nonredundant and delineates a distinct monocyte subpopulation.
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 5 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CCR1 and CCR2 Coexpression on Monocytes Is Nonredundant and Delineates a Distinct Monocyte SubpopulationJournal of immunology (Baltimore, Md. : 1950) · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE251648_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1055008 and SRA study SRP479139. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 19 samples.
How we read this: 5 replicated groups read from 20 sample titles; they account for 19 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7984559 resting_CCR1_2_rep1 resting_CCR1_2
- GSM7984560 resting_CCR1_2_rep2 resting_CCR1_2
- GSM7984561 resting_CCR1_2_rep3 resting_CCR1_2
- GSM7984562 resting_CCR1_2_rep4 resting_CCR1_2
- GSM7984563 resting_CCR2_rep1 resting_CCR2
- GSM7984564 resting_CCR2_rep2 resting_CCR2
- GSM7984565 resting_CCR2_rep3 resting_CCR2
- GSM7984566 resting_CCR2_rep4 resting_CCR2
- GSM7984567 inflamed_CCR1_2_rep2 inflamed_CCR1_2
- GSM7984568 inflamed_CCR1_2_rep3 inflamed_CCR1_2
- GSM7984569 inflamed_CCR1_2_rep4 inflamed_CCR1_2
- GSM7984570 inflamed_CCR1_rep1 inflamed_CCR1
- GSM7984571 inflamed_CCR1_rep2 inflamed_CCR1
- GSM7984572 inflamed_CCR1_rep3 inflamed_CCR1
- GSM7984573 inflamed_CCR1_rep4 inflamed_CCR1
- GSM7984574 inflamed_CCR2_rep1 inflamed_CCR2
- GSM7984575 inflamed_CCR2_rep2 inflamed_CCR2
- GSM7984576 inflamed_CCR2_rep3 inflamed_CCR2
- GSM7984577 inflamed_CCR2_rep4 inflamed_CCR2
- GSM7984578 bone marrow, CCR1/2+ monocytes, resting transcriptome
- GSE251646 CCR1 and CCR2 co-expression on monocytes is nonredundant and delineates a distinct monocyte subpopulation. [RNA-Seq] 19 samples shares ccr1, ccr2, co-expression, subpopulation, nonredundant, delineates, monocytes, distinct
- GSE251647 CCR1 and CCR2 co-expression on monocytes is non-redundant and delineates a distinct monocyte subpopulation. [scRNA-Seq] 1 samples shares ccr1, ccr2, co-expression, subpopulation, delineates, monocytes, distinct
- GSE312439 CD51 expression delineates functionally distinct astrocyte subpopulations in neural circuits 12 samples shares subpopulation, delineates, distinct
- GSE301118 Targeting Ccr1, Ccr3, Ccr2 and Ccr5 in H3.1K27 Mutant Diffuse Midline Gliomas (DMGs). 6 samples shares ccr1, ccr2
- GSE277303 Inducible CCR2+ nonclassical monocytes mediate the regression of cancer metastasis 42 samples shares ccr2, monocytes
- GSE249242 B cells mediate lung ischemia-reperfusion injury by recruitment of CCR2+-classical monocytes via synergistic BCR-TLR4 signaling 3 samples shares ccr2, monocytes
- GSE268156 CCR2+ monocytes promote white matter injury and cognitive dysfunction after myocardial infarction 2 samples shares ccr2, monocytes
- GSE205991 Multiple subpopulations in medullary thymic epithelial cells are regulated by Aire with distinctive modes of gene regulations [deep single-cell RNA-seq] 2148 samples shares subpopulation, distinct
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.