Paternal hypercholesterolemia elicits sex-specific exacerbation of atherosclerosis in adult offspring of LDL receptor-deficient mice
Non-coding RNA profiling · mouse · 33 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 33 samples: 25 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Paternal hypercholesterolemia elicits sex-specific exacerbation of atherosclerosis in offspringJCI insight · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE251713_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1055098 and SRA study SRP479294. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 33 sample titles: 25 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7986347 intima LCD male rep 1 [F1LCD2]
- GSM7986348 intima LCD male rep 2 [F1LCD3]
- GSM7986349 intima LCD male rep 3 [F1LCD4]
- GSM7986350 intima LCD male rep 4 [F1LCD5]
- GSM7986351 intima LCD female rep 1 [F1LCD6]
- GSM7986352 intima LCD female rep 2 [F1LCD7]
- GSM7986353 intima LCD female rep 3 [F1LCD8]
- GSM7986354 intima LCD female rep 4 [F1LCD9]
- GSM7986355 intima LCD female rep 5 [F1LCD10]
- GSM7986356 intima LCD female rep 6 [F1LCD11]
- GSM7986357 intima LCD female rep 7 [F1LCD12]
- GSM7986358 intima HCD male rep 1 [F1HCD1]
- GSM7986359 intima HCD male rep 2 [F1HCD2]
- GSM7986360 intima HCD male rep 3 [F1HCD4]
- GSM7986361 intima HCD male rep 4 [F1HCD5]
- GSM7986362 intima HCD male rep 5 [F1HCD6]
- GSM7986363 intima HCD female rep 1 [F1HCD7]
- GSM7986364 intima HCD female rep 2 [F1HCD8]
- GSM7986365 intima HCD female rep 3 [F1HCD9]
- GSM7986366 intima HCD female rep 4 [F1HCD10]
- GSM7986367 intima HCD female rep 5 [F1HCD11]
- GSM7986368 sperm LCD traditional rep 1
- GSM7986369 sperm LCD traditional rep 2
- GSM7986370 sperm LCD traditional rep 3
- GSM7986371 sperm LCD PANDORA-seq rep 1
- GSM7986372 sperm LCD PANDORA-seq rep 2
- GSM7986373 sperm LCD PANDORA-seq rep 3
- GSM7986374 sperm HCD traditional rep 1
- GSM7986375 sperm HCD traditional rep 2
- GSM7986376 sperm HCD traditional rep 3
- GSM7986377 sperm HCD PANDORA-seq rep 1
- GSM7986378 sperm HCD PANDORA-seq rep 2
- GSM7986379 sperm HCD PANDORA-seq rep 3
- GSE210460 Time-Restricted Feeding Reduces Atherosclerosis in LDLR KO Mice but Not in ApoE Knockout Mice 24 samples shares ldl, atherosclerosis
- GSE255321 Therapeutic effects of FGF21 mimetic bFKB1 on MASH and atherosclerosis in Ldlr-/-.Leiden mice 24 samples shares ldl, atherosclerosis
- GSE210571 Analysis of LDLR-/- Type and LDLRP2Y6R-/- Macrophage Transcriptomes after atherosclerosis 6 samples shares ldl, atherosclerosis
- GSE276351 Maternal high-fat diet aggravates the development of atherosclerosis in offspring via epigenetic memory (SMART-Seq) 12 samples shares atherosclerosis, offspring
- GSE276350 Maternal high-fat diet aggravates the development of atherosclerosis in offspring via epigenetic memory (ATAC-Seq CUT&Tag) 12 samples shares atherosclerosis, offspring
- GSE338111 Sex-specific differences of amlexanox in a mouse model for atherosclerosis and MASLD 11 samples shares atherosclerosis, sex-specific
- GSE207641 Circular Slc17a5 regulated by VLDLR/QKI pathway inhibits neovascularization 15 samples shares ldl
- GSE287225 Laboratory mice engrafted with natural gut microbiota possess a wildling-like phenotype 160 samples shares ldl
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.