Decoding CD4+ T cell transcriptome in giant cell arteritis: novel pathways and altered cross-talk with monocytes
DNA methylation · human · 196 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 196 samples: 98 × VAS vs 98 × genomic DNA from CD4+ T-cell_VASGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE252024_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA1057134 and SRA study SRP480128. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 196 samples.
How we read this: 2 replicated groups read from 196 sample titles; they account for 196 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7991707 VAS1 VAS
- GSM7991708 VAS10 VAS
- GSM7991709 VAS100 VAS
- GSM7991710 VAS101 VAS
- GSM7991711 VAS102 VAS
- GSM7991712 VAS103 VAS
- GSM7991713 VAS104 VAS
- GSM7991714 VAS105 VAS
- GSM7991715 VAS106 VAS
- GSM7991716 VAS107 VAS
- GSM7991717 VAS11 VAS
- GSM7991718 VAS110 VAS
- GSM7991719 VAS112 VAS
- GSM7991720 VAS113 VAS
- GSM7991721 VAS115 VAS
- GSM7991722 VAS12 VAS
- GSM7991723 VAS13 VAS
- GSM7991724 VAS14 VAS
- GSM7991725 VAS15 VAS
- GSM7991726 VAS16 VAS
- GSM7991727 VAS17 VAS
- GSM7991728 VAS18 VAS
- GSM7991729 VAS19 VAS
- GSM7991730 VAS2 VAS
- GSM7991731 VAS20 VAS
- GSM7991732 VAS21 VAS
- GSM7991733 VAS22 VAS
- GSM7991734 VAS23 VAS
- GSM7991735 VAS24 VAS
- GSM7991736 VAS27 VAS
- GSM7991737 VAS28 VAS
- GSM7991738 VAS29 VAS
- GSM7991739 VAS3 VAS
- GSM7991740 VAS30 VAS
- GSM7991741 VAS31 VAS
- GSM7991742 VAS32 VAS
- GSM7991743 VAS33 VAS
- GSM7991744 VAS34 VAS
- GSM7991745 VAS35 VAS
- GSM7991746 VAS37 VAS
+ 156 more — browse all 196 samples with per-sample file links →
- GSE252020 Decoding CD4+ T cell transcriptome in giant cell arteritis: novel pathways and altered cross-talk with monocytes [RNA-seq] 98 samples shares cd4, cross-talk, arteritis, monocytes, decoding, altered, giant
- GSE267774 Specific CD4+ T cell phenotypes associate with bacterial control in people who ‘resist’ infection with Mycobacterium tuberculosis 3076 samples shares cd4
- GSE242232 Autoantigen-specific CD4+ T cells acquire an exhausted phenotype and persist in human antigen-specific autoimmune diseases 928 samples shares cd4
- GSE314342 Genome-scale perturb-seq in primary human CD4+ T cells reveals genes regulating T cell programs and human immune traits. 577 samples shares cd4
- GSE314188 Responders to low-dose ATG induce CD4+ T cell exhaustion in type 1 diabetes 514 samples shares cd4
- GSE288989 A distinct subset of stem-cell memory is poised for the cytotoxicity program in CD4+ T cells in humans 290 samples shares cd4
- GSE291286 Clinical cure of chronic hepatitis B is associated with priming and perpetuation of hepatic CD4+ T cell responses 98 samples shares cd4
- GSE308745 The Cd4+ T cell population Partners with Tpex CD8 T cells to mediate Antitumor Immunity in the Tumor Microenvironment.[PB cohort2] 87 samples shares cd4
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.