ChAHP and ChAHP2 control diverse retrotransposons by complementary activities [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 3 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ChAHP2 and ChAHP control diverse retrotransposons by complementary activitiesGenes & development · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE253065_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1063742 and SRA study SRP483224. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE253066 ChAHP and ChAHP2 control diverse retrotransposons by complementary activities [ChIP-seq] 48 samples shares chahp2, retrotransposons, complementary, activities, control, diverse, chahp
- GSE253069 ChAHP and ChAHP2 control diverse retrotransposons by complementary activities 69 samples shares chahp2, retrotransposons, complementary, activities, control, diverse, chahp
- GSE253067 ChAHP and ChAHP2 control diverse retrotransposons by complementary activities [RNA-seq] 18 samples shares chahp2, retrotransposons, complementary, activities, control, diverse, chahp
- GSE297834 ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment [ChIP-seq] 72 samples shares retrotransposons, chahp
- GSE222735 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [ATAC-Seq] 8 samples shares activities, atac-seq
- GSE316711 IAP retrotransposons contribute to the transcriptional diversity of the murine placenta [ATAC-Seq] 4 samples shares retrotransposons, atac-seq
- GSE294281 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [CCB/FNB ATAC-seq] 2 samples shares activities, atac-seq
- GSE297837 ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment. 126 samples shares retrotransposons, chahp
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.