BSome-dependent ciliary Hedgehog signaling governs cell fate in the white adipose tissue
RNA-seq (gene expression) · mouse · 28 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 28 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- BBS8-dependent ciliary Hedgehog signaling governs cell fate in the white adipose tissueThe EMBO journal · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE254259_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1069087 and SRA study SRP485980. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 28 more — browse all 28 samples with per-sample file links →
- GSE254255 BBSome-dependent ciliary Hedgehog signaling governs cell fate in the white adipose tissue (RNA-Seq) 18 samples shares bsome-dependent, hedgehog, ciliary, governs, adipose, white, fate
- GSE254258 BBSome-dependent ciliary Hedgehog signaling governs cell fate in the white adipose tissue (scRNA-Seq) 10 samples shares bsome-dependent, hedgehog, ciliary, governs, adipose, white, fate
- GSE121691 ERα governs a specific gene expression program and metabolic function in white adipose tissue. 21 samples shares governs, adipose, white
- GSE320474 Innate Imprinting of Transcriptional Trajectories Governs Respiratory TRM Fate and Persistence 30 samples shares governs, fate
- GSE265897 Early IKKb-dependent anabolic and fibrotic signature governs vascular smooth muscle cells fate and abdominal aortic aneurysm development 19 samples shares governs, fate
- GSE285427 PKM2/STAT1 pathway governs naïve B cell fate in germinal center formation within Peyer’s patches and gut mucosal immunity 8 samples shares governs, fate
- GSE266025 The asymmetric expression of HSPA2 in blastomeres governs the first embryonic cell-fate decision 6 samples shares governs, fate
- GSE205520 Adipocyte thyroid hormone receptor β determines the intracellular usage and fate of glucose and governs systemic homeostasis 5 samples shares governs, fate
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.