A pan-family screen of Nuclear Receptors in immunocytes reveals ligand-dependent inflammasome control
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 70 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 70 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A pan-family screen of nuclear receptors in immunocytes reveals ligand-dependent inflammasome controlImmunity · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE254573_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1071064 and SRA study SRP486663. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 70 more — browse all 70 samples with per-sample file links →
- GSE254406 A pan-family screen of Nuclear Receptors in immunocytes reveals ligand-dependent inflammasome control [RNA-seq 1] 52 samples shares ligand-dependent, inflammasome, immunocytes, pan-family, receptors, nuclear, control, screen
- GSE273340 A pan-family screen of Nuclear Receptors in immunocytes reveals ligand-dependent inflammasome control [RNA-seq 2] 12 samples shares ligand-dependent, inflammasome, immunocytes, pan-family, receptors, nuclear, control, screen
- GSE254407 A pan-family screen of Nuclear Receptors in immunocytes reveals ligand-dependent inflammasome control [ChIPmentation] 4 samples shares ligand-dependent, inflammasome, immunocytes, pan-family, receptors, nuclear, control, screen
- GSE254572 A pan-family screen of Nuclear Receptors in immunocytes reveals ligand-dependent inflammasome control [scRNA-seq] 2 samples shares ligand-dependent, inflammasome, immunocytes, pan-family, receptors, nuclear, control, screen
- GSE274312 A cis-regulatory element controls HDAC9 expression to fine-tune inflammasome-dependent chronic inflammation 24 samples shares inflammasome, control
- GSE207875 Nuclear Receptor Coactivator 6 is a Critical Regulator of NLRP3 Inflammasome Activation and Gouty Arthritis 8 samples shares inflammasome, nuclear
- GSE43034 Canonical Nlrp3 inflammasome activation links systemic age-related inflammation with functional decline 32 samples shares inflammasome
- GSE278604 Neutrophil KLF2 regulates inflammasome-dependent neonatal mortality from endotoxemia 28 samples shares inflammasome
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.