A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 70 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 70 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortexProceedings of the National Academy of Sciences of the United States of America · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE254693_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1071528 and SRA study SRP487082. Searching any of these in the dataset finder brings you back here.
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+ 70 more — browse all 70 samples with per-sample file links →
- GSE254692 A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex [CUT&RUN 22] 28 samples shares neurogenesis, gliogenesis, conserved, cerebral, switch, cortex, logic
- GSE254691 A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex [CUT&RUN] 24 samples shares neurogenesis, gliogenesis, conserved, cerebral, switch, cortex, logic
- GSE248250 Multimodal perspectives on the upper layer neurogenesis in the murine cerebral cortex 137 samples shares neurogenesis, cerebral, cortex
- GSE299933 The sleep–wake history contributes to rhythmic BMAL1 chromatin binding in the cerebral cortex but not in the liver 95 samples shares cerebral, cortex
- GSE271022 Transcriptional profiling of cerebral cortex and striatum from a mouse model of Huntington's disease (Q140) crossed with Msh6 heterozygous and homozygous mice 96 samples shares cerebral, cortex
- GSE229826 Transcriptional profiling of cerebral cortex from a mouse model of Huntington's disease (Q140) crossed with Msh3 heterozygous and homozygous mice [Msh3_cortex] 48 samples shares cerebral, cortex
- GSE280784 Effects of loss and gain of KAT6B on gene expression in the developing cerebral cortex [Myst4_RNAseq] 32 samples shares cerebral, cortex
- GSE52564 An RNA-Seq transcriptome and splicing database of neurons, glia, and vascular cells of the cerebral cortex 17 samples shares cerebral, cortex
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.