Extensive folding variability between homologous chromosomes in mammalian cells [ChIP-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 3 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Extensive folding variability between homologous chromosomes in mammalian cellsMolecular systems biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE254710_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1071563 and SRA study SRP487140. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE254723 Extensive folding variability between homologous chromosomes in mammalian cells 2239 samples shares variability, chromosomes, homologous, extensive, mammalian, folding
- GSE254675 Extensive folding variability between homologous chromosomes in mammalian cells [RNA-seq] 2 samples shares variability, chromosomes, homologous, extensive, mammalian, folding
- GSE93728 Extensive Functional Redundancy of Mammalian Enhancers [ChIP-seq] 36 samples shares extensive, mammalian, chip-seq
- GSE269952 Extensive mutual influences of SMC complexes shape 3D genome folding 176 samples shares extensive, folding
- GSE93730 Extensive Functional Redundancy of Mammalian Enhancers 52 samples shares extensive, mammalian
- GSE93729 Extensive Functional Redundancy of Mammalian Enhancers [RNA-seq] 16 samples shares extensive, mammalian
- GSE305745 Extensive Crosstalk between BMP and Notch Signaling Pathways in Activated Adult Muscle Stem Cells [CUT&Tag] 14 samples shares extensive
- GSE276673 ZBTB16/PLZF regulates self-renewal and differentiation of juvenile spermatogonial stem cells through an extensive transcription factor-chromatin poising network 20 samples shares extensive
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.