O-GlcNAcylation of CTCF regulates 3D chromatin structure [HiC]
mouse · 6 samples
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples: 3 × WT HiC vs 3 × MUT HiCGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
- Paper
- The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylationNature communications · 2024
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE255858_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA1070848. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 6 samples.
How we read this: 2 replicated groups read from 6 sample titles; they account for 6 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8081763 WT HiC rep1 WT HiC
- GSM8081764 WT HiC rep2 WT HiC
- GSM8081765 WT HiC rep3 WT HiC
- GSM8081766 MUT HiC rep1 MUT HiC
- GSM8081767 MUT HiC rep2 MUT HiC
- GSM8081768 MUT HiC rep3 MUT HiC
- GSE72539 CTCF binding polarity determines chromatin looping [4C] 504 samples shares ctcf, chromatin
- GSE279796 Setdb1 regulates proper differentiation of adult intestinal stem cells via restraining permissive chromatin structure and transcriptional variability 18 samples shares chromatin, structure
- GSE262521 Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation 68 samples shares ctcf
- GSE234248 Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [RNA-seq] 24 samples shares ctcf
- GSE234251 Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [Mnase-seq] 21 samples shares ctcf
- GSE274040 Transcriptional and chromatin accessibility landscapes of hematopoiesis in a mouse model of breast cancer 16 samples shares chromatin
- GSE281122 INO80/SWR Remodelers Regulate Pol II Transcription through BRD2 and Chromatin Landscape (TT-seq) 16 samples shares chromatin
- GSE315771 HDI-STARR-seq library profiling of differential accessible chromatin regions (DARs) in livers of male, female and male treated with continuous growth hormone (cGH) mice. 12 samples shares chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.