Partial beta cell loss induces transient compensatory proliferation II
RNA-seq (gene expression) · mouse · 34 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 34 samples: 9 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE256518_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1079820 and SRA study SRP491450. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 34 samples.
How we read this: 9 replicated groups read from 34 sample titles; they account for 34 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8102141 STZ 75mg/kg HFD 10WPA rep1 STZ 75mg/kg HFD 10WPA
- GSM8102142 STZ 75mg/kg HFD 10WPA rep2 STZ 75mg/kg HFD 10WPA
- GSM8102143 STZ 75mg/kg HFD 10WPA rep3 STZ 75mg/kg HFD 10WPA
- GSM8102144 STZ 75mg/kg HFD 10WPA rep4 STZ 75mg/kg HFD 10WPA
- GSM8102145 STZ 75mg/kg SD 10WPA rep1 STZ 75mg/kg SD 10WPA
- GSM8102146 STZ 75mg/kg SD 10WPA rep2 STZ 75mg/kg SD 10WPA
- GSM8102147 STZ 75mg/kg SD 10WPA rep3 STZ 75mg/kg SD 10WPA
- GSM8102148 STZ 75mg/kg SD 10WPA rep4 STZ 75mg/kg SD 10WPA
- GSM8102149 CTRL, rep1 CTRL,
- GSM8102150 CTRL, rep2 CTRL,
- GSM8102151 CTRL, rep3 CTRL,
- GSM8102152 DT 5 DPA rep1 DT 5 DPA
- GSM8102153 DT 5 DPA rep2 DT 5 DPA
- GSM8102154 DT 5 DPA rep3 DT 5 DPA
- GSM8102155 DT 5 DPA rep4 DT 5 DPA
- GSM8102156 CTRL HFD 10W rep1 CTRL HFD 10W
- GSM8102157 DT 30 DPA rep1 DT 30 DPA
- GSM8102158 DT 30 DPA rep2 DT 30 DPA
- GSM8102159 DT 30 DPA rep3 DT 30 DPA
- GSM8102160 DT 30 DPA rep4 DT 30 DPA
- GSM8102161 CTRL HFD 10W rep2 CTRL HFD 10W
- GSM8102162 CTRL HFD 10W rep3 CTRL HFD 10W
- GSM8102163 CTRL HFD 10W rep4 CTRL HFD 10W
- GSM8102164 CTRL HFD 10W rep5 CTRL HFD 10W
- GSM8102165 CTRL SD 10W rep1 CTRL SD 10W
- GSM8102166 CTRL SD 10W rep2 CTRL SD 10W
- GSM8102167 CTRL SD 10W rep3 CTRL SD 10W
- GSM8102168 DT HFD 10WPA rep1 DT HFD 10WPA
- GSM8102169 DT HFD 10WPA rep2 DT HFD 10WPA
- GSM8102170 DT HFD 10WPA rep3 DT HFD 10WPA
- GSM8102171 DT SD 10WPA rep1 DT SD 10WPA
- GSM8102172 DT SD 10WPA rep2 DT SD 10WPA
- GSM8102173 DT SD 10WPA rep3 DT SD 10WPA
- GSM8102174 DT SD 10WPA rep4 DT SD 10WPA
- GSE235779 Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs 68 samples shares compensatory, transient
- GSE194200 Induction of transient and adaptive vs maladaptive unfolded protein responses of the endoplasmic reticulum in pancreatic beta cells 39 samples shares transient, beta
- GSE272215 Loss of aryl hydrocarbon receptor and long-term, but not short-term treatment with BAY2416964 alters gene expression profiles and reduces proliferation and migration of PyMT mammary cancer cells 16 samples shares proliferation, loss
- GSE288224 Transient Pharmacological Inhibition of SUMOylation during Pregnancy Induces Craniofacial Malformations in Offspring Mice 18 samples shares transient, induces
- GSE296365 Prenatal stress induces transient developmental alterations in distinct GABAergic populations and leads to long-lasting behavioral abnormalities 16 samples shares transient, induces
- GSE281151 Transient histone deacetylase inhibition induces cellular memory of gene expression and three-dimensional genome folding 259 samples shares transient, induces
- GSE296763 Mitochondrial respiration is necessary for CD8 T cell proliferation and cell fate 99 samples shares proliferation
- GSE285141 Histone H3.3 ensures cell proliferation and genomic stability during myeloid cell development [RNA-seq] 81 samples shares proliferation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.