Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 73 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 73 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell developmentNature immunology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE259355_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1081365 and SRA study SRP491984. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 73 more — browse all 73 samples with per-sample file links →
- GSE259358 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [CUT&RUN] 22 samples shares ebf1, pax5, e2a, degradation, analyzed, protein, ikaros
- GSE260523 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development 181 samples shares ebf1, pax5, e2a, degradation, analyzed, protein, ikaros
- GSE260522 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [RNA-seq] 86 samples shares ebf1, pax5, e2a, degradation, analyzed, protein, ikaros
- GSE295902 EBF1 and PAX5 exert dose dependent epigenetic repression of T-lineage potential [ATAC-seq] 18 samples shares ebf1, pax5, atac-seq
- GSE295900 EBF1 and PAX5 exert dose dependent epigenetic repression of T-lineage potential [RNA-seq] 20 samples shares ebf1, pax5
- GSE295901 EBF1 and PAX5 exert dose dependent epigenetic repression of T-lineage potential [ChIPmentation] 16 samples shares ebf1, pax5
- GSE295899 EBF1 and PAX5 exert dose dependent epigenetic repression of T-lineage potential [scMultiome] 8 samples shares ebf1, pax5
- GSE245683 ATAC-seq of mouse cortex undergoing early degradation after traumatic brain injury (TBI) 12 samples shares degradation, atac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.