Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Bulk RNA-seq]
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 5 × Somatosensory cortex cells, iTBS, vs 5 × Somatosensory cortex cells, cTBS, vs 5 × Somatosensory cortex cells, sham,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Subthreshold repetitive transcranial magnetic stimulation induces cortical layer-, brain region-, and protocol-dependent neural plasticityScience advances · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE259403_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1081424 and SRA study SRP492114. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 3 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8115624 Somatosensory cortex cells, iTBS, replicate 1 Somatosensory cortex ce…
- GSM8115625 Somatosensory cortex cells, cTBS, replicate 1 Somatosensory cortex ce…
- GSM8115626 Somatosensory cortex cells, iTBS, replicate 2 Somatosensory cortex ce…
- GSM8115627 Somatosensory cortex cells, sham, replicate 1 Somatosensory cortex ce…
- GSM8115628 Somatosensory cortex cells, cTBS, replicate 2 Somatosensory cortex ce…
- GSM8115629 Somatosensory cortex cells, sham, replicate 2 Somatosensory cortex ce…
- GSM8115630 Somatosensory cortex cells, sham, replicate 3 Somatosensory cortex ce…
- GSM8115631 Somatosensory cortex cells, cTBS, replicate 3 Somatosensory cortex ce…
- GSM8115632 Somatosensory cortex cells, iTBS, replicate 3 Somatosensory cortex ce…
- GSM8115633 Somatosensory cortex cells, iTBS, replicate 4 Somatosensory cortex ce…
- GSM8115634 Somatosensory cortex cells, iTBS, replicate 5 Somatosensory cortex ce…
- GSM8115635 Somatosensory cortex cells, cTBS, replicate 4 Somatosensory cortex ce…
- GSM8115636 Somatosensory cortex cells, cTBS, replicate 5 Somatosensory cortex ce…
- GSM8115637 Somatosensory cortex cells, sham, replicate 4 Somatosensory cortex ce…
- GSM8115638 Somatosensory cortex cells, sham, replicate 5 Somatosensory cortex ce…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.