miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesis (RNA-Seq)
Single-cell RNA-seq · mouse · 27 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 27 samples: 9 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesisScience advances · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE259426_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1081464 and SRA study SRP492164. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 27 samples.
How we read this: 9 replicated groups read from 27 sample titles; they account for 27 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8116118 Mouse embryos, Vehicle, Replicate 1 Mouse embryos, Vehicle,
- GSM8116119 Mouse embryos, Vehicle, Replicate 2 Mouse embryos, Vehicle,
- GSM8116120 Mouse embryos, Vehicle, Replicate 3 Mouse embryos, Vehicle,
- GSM8116121 Mouse embryos, SAHA, Replicate 1 Mouse embryos, SAHA,
- GSM8116122 Mouse embryos, SAHA, Replicate 2 Mouse embryos, SAHA,
- GSM8116123 Mouse embryos, SAHA, Replicate 3 Mouse embryos, SAHA,
- GSM8116124 Mouse embryos, A485, Replicate 1 Mouse embryos, A485,
- GSM8116125 Mouse embryos, A485, Replicate 2 Mouse embryos, A485,
- GSM8116126 Mouse embryos, A485, Replicate 3 Mouse embryos, A485,
- GSM8116127 Mouse embryos, TSA, Replicate 1 Mouse embryos, TSA,
- GSM8116128 Mouse embryos, TSA, Replicate 2 Mouse embryos, TSA,
- GSM8116129 Mouse embryos, TSA, Replicate 3 Mouse embryos, TSA,
- GSM8116130 Mouse embryos, siControl, Replicate 1 Mouse embryos, siContro…
- GSM8116131 Mouse embryos, siControl, Replicate 2 Mouse embryos, siContro…
- GSM8116132 Mouse embryos, siControl, Replicate 3 Mouse embryos, siContro…
- GSM8116133 Mouse embryos, siP300, Replicate 1 Mouse embryos, siP300,
- GSM8116134 Mouse embryos, siP300, Replicate 2 Mouse embryos, siP300,
- GSM8116135 Mouse embryos, siP300, Replicate 3 Mouse embryos, siP300,
- GSM8116136 Mouse embryos, siKat6a, Replicate 1 Mouse embryos, siKat6a,
- GSM8116137 Mouse embryos, siKat6a, Replicate 2 Mouse embryos, siKat6a,
- GSM8116138 Mouse embryos, siKat6a, Replicate 3 Mouse embryos, siKat6a,
- GSM8116139 Mouse embryos, siKat6b, Replicate 1 Mouse embryos, siKat6b,
- GSM8116140 Mouse embryos, siKat6b, Replicate 2 Mouse embryos, siKat6b,
- GSM8116141 Mouse embryos, siKat6b, Replicate 3 Mouse embryos, siKat6b,
- GSM8116142 Mouse embryos, siComb, Replicate 1 Mouse embryos, siComb,
- GSM8116143 Mouse embryos, siComb, Replicate 2 Mouse embryos, siComb,
- GSM8116144 Mouse embryos, siComb, Replicate 3 Mouse embryos, siComb,
- GSE259428 miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesis 39 samples shares mir-203, embryogenesis, facilitates, transitions, epigenetic, modulation, timely
- GSE222745 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [scRNA-Seq] 422 samples shares facilitates, epigenetic, rna-seq
- GSE222738 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [RNA-Seq] 12 samples shares facilitates, epigenetic, rna-seq
- GSE294292 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [OSK CCC/FN RNA-seq] 4 samples shares facilitates, epigenetic, rna-seq
- GSE274544 Single cell profiling reveals three endothelial to hematopoietic transitions with divergent isoform expression landscapes [scRNA-Seq] 1494 samples shares transitions, rna-seq
- GSE309071 Single cell profiling reveals three endothelial to hematopoietic transitions with divergent isoform expression landscapes [RNA-seq] 221 samples shares transitions, rna-seq
- GSE274492 The remodeling of bivalent chromatin is essential for mouse peri-implantation embryogenesis [Valid RNA-Seq] 200 samples shares embryogenesis, rna-seq
- GSE274490 The remodeling of bivalent chromatin is essential for mouse peri-implantation embryogenesis [Wild type RNA-Seq] 67 samples shares embryogenesis, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.