miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesis
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 39 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 39 samples: 9 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesisScience advances · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE259428_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1081458 and SRA study SRP492152. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 27 samples.
How we read this: 9 replicated groups read from 39 sample titles; they account for 27 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8116112 Mouse embryos, E2.5, WT, H3K9ac
- GSM8116113 Mouse embryos, E2.5, KO, H3K9ac
- GSM8116114 Mouse embryos, E2.5, KI, H3K9ac
- GSM8116115 Mouse embryos, E2.5, WT, H3K27ac
- GSM8116116 Mouse embryos, E2.5, KO, H3K27ac
- GSM8116117 Mouse embryos, E2.5, KI, H3K27ac
- GSM8116118 Mouse embryos, Vehicle, Replicate 1 Mouse embryos, Vehicle,
- GSM8116119 Mouse embryos, Vehicle, Replicate 2 Mouse embryos, Vehicle,
- GSM8116120 Mouse embryos, Vehicle, Replicate 3 Mouse embryos, Vehicle,
- GSM8116121 Mouse embryos, SAHA, Replicate 1 Mouse embryos, SAHA,
- GSM8116122 Mouse embryos, SAHA, Replicate 2 Mouse embryos, SAHA,
- GSM8116123 Mouse embryos, SAHA, Replicate 3 Mouse embryos, SAHA,
- GSM8116124 Mouse embryos, A485, Replicate 1 Mouse embryos, A485,
- GSM8116125 Mouse embryos, A485, Replicate 2 Mouse embryos, A485,
- GSM8116126 Mouse embryos, A485, Replicate 3 Mouse embryos, A485,
- GSM8116127 Mouse embryos, TSA, Replicate 1 Mouse embryos, TSA,
- GSM8116128 Mouse embryos, TSA, Replicate 2 Mouse embryos, TSA,
- GSM8116129 Mouse embryos, TSA, Replicate 3 Mouse embryos, TSA,
- GSM8116130 Mouse embryos, siControl, Replicate 1 Mouse embryos, siContro…
- GSM8116131 Mouse embryos, siControl, Replicate 2 Mouse embryos, siContro…
- GSM8116132 Mouse embryos, siControl, Replicate 3 Mouse embryos, siContro…
- GSM8116133 Mouse embryos, siP300, Replicate 1 Mouse embryos, siP300,
- GSM8116134 Mouse embryos, siP300, Replicate 2 Mouse embryos, siP300,
- GSM8116135 Mouse embryos, siP300, Replicate 3 Mouse embryos, siP300,
- GSM8116136 Mouse embryos, siKat6a, Replicate 1 Mouse embryos, siKat6a,
- GSM8116137 Mouse embryos, siKat6a, Replicate 2 Mouse embryos, siKat6a,
- GSM8116138 Mouse embryos, siKat6a, Replicate 3 Mouse embryos, siKat6a,
- GSM8116139 Mouse embryos, siKat6b, Replicate 1 Mouse embryos, siKat6b,
- GSM8116140 Mouse embryos, siKat6b, Replicate 2 Mouse embryos, siKat6b,
- GSM8116141 Mouse embryos, siKat6b, Replicate 3 Mouse embryos, siKat6b,
- GSM8116142 Mouse embryos, siComb, Replicate 1 Mouse embryos, siComb,
- GSM8116143 Mouse embryos, siComb, Replicate 2 Mouse embryos, siComb,
- GSM8116144 Mouse embryos, siComb, Replicate 3 Mouse embryos, siComb,
- GSM8116145 Mouse embryos, E3.5, WT
- GSM8116146 Mouse embryos, E3.5, KO
- GSM8116147 Mouse embryos, E3.5, KI
- GSM8116148 Mouse embryos, E4.5, WT
- GSM8116149 Mouse embryos, E4.5, KO
- GSM8116150 Mouse embryos, E4.5, KI
- GSE259426 miR-203 facilitates timely cell fate transitions via epigenetic modulation during early embryogenesis (RNA-Seq) 27 samples shares mir-203, embryogenesis, facilitates, transitions, epigenetic, modulation, timely, early
- GSE293593 Slow RNAPII elongation facilitates early pluripotency cell transitions without reducing replication fork rates 17 samples shares facilitates, transitions, early
- GSE254025 The TFIID subunit Taf13 is dispensable for RNA polymerase II transcription, but essential for early embryogenesis 24 samples shares embryogenesis, early
- GSE222746 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle 460 samples shares facilitates, epigenetic
- GSE222745 Enhanced activities of OCT4 and SOX2 facilitates epigenetic reprogramming by modulating cell cycle [scRNA-Seq] 422 samples shares facilitates, epigenetic
- GSE311349 Polycomb Repressive Complex 1 Primes Non-Growing Oocytes for Growth and Early Embryogenesis [CUT&Tag] 32 samples shares embryogenesis, early
- GSE295196 m6A RNA methylation in the maintenance of X-chromosome inactivation and X to autosome dosage compensation in early embryogenesis [RNA-Seq] 14 samples shares embryogenesis, early
- GSE229024 Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [ChIP-seq] 14 samples shares embryogenesis, early
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.