Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition
RNA-seq (gene expression) · mouse · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competitionDevelopmental cell · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE260579_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1082271 and SRA study SRP492577. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 16 more — browse all 16 samples with per-sample file links →
- GSE236543 Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition 17 samples shares self-organize, bmp-mediated, competition, floorplate, organoids, cluster, neural, tube
- GSE128241 Distinct modes of cell competition shape mammalian tissue morphogenesis 975 samples shares competition
- GSE294530 Mosaic gastruloids reveal a temporal restriction for developmental cell competition 69 samples shares competition
- GSE320380 Competition between commensal protists shapes gut mucosal immunity in mice 59 samples shares competition
- GSE282304 REL deregulation stands as a primary hit for AID-imprinted B-cells along the germinal center competition 30 samples shares competition
- GSE315069 Smad4-p65 interactions drive BMP-mediated protection against inflammatory cell death [RNA-Seq] 12 samples shares bmp-mediated
- GSE306851 Dysregulated ClpP Activation Depletes AML Cells and Restores T-cell Function via Metabolic Competition 10 samples shares competition
- GSE322723 MECOM promotes leukemia progression and inhibits mast cell differentiation through functional competition with GATA2 6 samples shares competition
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.