Senescence-correlated gene expression programs of human prostate stromal cells in response to multiple proliferation-arresting stress and their potential in driving prostate neoplasia
Expression microarray · human · 12 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 10 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE26143_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA135393. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 12 sample titles: 10 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM641850 PSC27_Pre_1, untreated PSC27 cells, replicate #1
- GSM641851 PSC27_H2O2_1, PSC27 cells treated with hydrogen peroxide, replicate #1
- GSM641852 PSC27_BLEO_1, PSC27 cells treated with bleomycin, replicate #1
- GSM641853 PSC27_RAD_1, PSC27 cells treated with gamma-irradiation, replicate #1
- GSM641854 PSC27_Pre_2, untreated PSC27 cells, replicate #2
- GSM641855 PSC27_H2O2_2, PSC27 cells treated with hydrogen peroxide, replicate #2
- GSM641856 PSC27_BLEO_2, PSC27 cells treated with bleomycin, replicate #2
- GSM641857 PSC27_RAD_1, PSC27 cells treated with gamma-irradiation, replicate #2
- GSM641858 PSC27_Pre_3, untreated PSC27 cells, replicate #3
- GSM641859 PSC27_H2O2_3, PSC27 cells treated with hydrogen peroxide, replicate #3
- GSM641860 PSC27_BLEO_3, PSC27 cells treated with bleomycin, replicate #3
- GSM641861 PSC27_RAD_1, PSC27 cells treated with gamma-irradiation, replicate #3
- GSE315888 Proteomic and transcriptomic profiling identifies TIPRL as a potential target in multiple myeloma with 1q gain 34 samples shares potential, multiple
- GSE320069 Investigations into the aetiopathogenesis of orofacial granulomatosis using multiple omics technologies reveals a potential role for B cells 16 samples shares potential, multiple
- GSE16476 Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma 88 samples shares potential
- GSE77627 Whole genome profiling of liver biopsies discloses potential biomarkers for diagnosis of idiopathic non-cirrhotic portal hypertension 54 samples shares potential
- GSE214969 Functional profiles of curatively treated adenoid cystic carcinoma unveil prognostic features and potentially targetable pathways. 46 samples shares potential
- GSE291257 Gene Expression Profiling Identifies Potential Biomarkers for Vaso-Occlusive Episodes in Sickle Cell Disease 414 samples shares potential
- GSE217352 A Blood-based Transcriptomic Signature Stratifies Severe Crohn's disease and Defines Potentially Targetable Therapeutic Pathways 265 samples shares potential
- GSE334577 Reversible epiblast regionalisation determines differentiation potential of human PSCs 141 samples shares potential
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.