RYBP coordinates with Trithorax complex and selectively recruits Polycomb complex for cell fate control
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 96 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 96 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Polycomb protein RYBP facilitates super-enhancer activityMolecular medicine (Cambridge, Mass.) · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE261485_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1087282 and SRA study SRP494987. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 96 more — browse all 96 samples with per-sample file links →
- GSE280981 ChREBP-mediated control of Them1 expression coordinates thermogenesis with glycolysis and lipogenesis 26 samples shares coordinates, control
- GSE217767 ARF alters PAF1 complex integrity to selectively repress oncogenic transcription programs upon p53 loss 20 samples shares selectively, complex
- GSE217765 ARF alters PAF1 complex integrity to selectively repress oncogenic transcription programs upon p53 loss 14 samples shares selectively, complex
- GSE239700 NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer [bulk_mouse] 12 samples shares selectively, control
- GSE330655 Y chromosome gene KDM5D coordinates epigenetic and metabolic control of sex differences in CD8⁺ T cell immunity [RNA-seq] 12 samples shares coordinates, control
- GSE239703 NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer [sc_rna] 10 samples shares selectively, control
- GSE331334 Y chromosome gene KDM5D coordinates epigenetic and metabolic control of sex differences in CD8⁺ T cell immunity [CUT&Run] 8 samples shares coordinates, control
- GSE217766 ARF alters PAF1 complex integrity to selectively repress oncogenic transcription programs upon p53 loss 6 samples shares selectively, complex
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.