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Characterization of mesenchymal support required for in vivo engraftment and development of human PSC-derived organoids

GSE262403 Homo sapiens Expression profiling by high throughput sequencing 8 samples Submitted 2025/01/01 Platform GPL24676
Summary
Human gastrointestinal (GI) organoids derived from pluripotent stem cells have unique potential for studying organogenesis, physiology, and diseases. To this end, their transplantation into animal models to further their development into functional organs provides a valuable tool. However, organoids from different GI regions, for example, the esophagus or intestine, harbor different engraftment capabilities. Here, we developed a tissue-engineering approach and show that enhancing the mesenchyme-to-endoderm ratio enables reliable engraftment of GI organoids. However, endoderm/mesoderm recombinations reveal that only Human Intestinal Organoid (HIO) mesenchyme allows full development of GI epitheliums in vivo. Comparative mesenchyme analysis from esophageal, gastric, intestinal, and colonic organoids shows endothelial cell enrichment within the HIO mesenchyme, and we demonstrate by endothelial cell depletion or addition that these cells are required and sufficient for proper GI organoid development in vivo. Our findings highlight the optimal mesenchymal cellular composition needed to support GI organoid engraftment, tissue growth, and function.
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Direct links to NCBI, no account and no request form: the whole study as GSE262403_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1091652 and SRA study SRP497780. Searching any of these in the dataset finder brings you back here.

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