Implicating type 2 diabetes effector genes in relevant metabolic cellular models using promoter-focused Capture-C [Capture-C]
human · 11 samples
- Organism
- Homo sapiens (human)
- Samples
- 11 samples: 3 × EndoC-BH1 vs 3 × SGBS Differentiated vs 3 × SGBS Undifferentiated vs 2 × HEPG2Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
- Paper
- Implicating type 2 diabetes effector genes in relevant metabolic cellular models using promoter-focused Capture-CDiabetologia · 2024
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE262496_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA1092046. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 11 samples.
How we read this: 4 replicated groups read from 11 sample titles; they account for 11 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8170508 EndoC-BH1 replicate 1 EndoC-BH1
- GSM8170509 EndoC-BH1 replicate 2 EndoC-BH1
- GSM8170510 EndoC-BH1 replicate 3 EndoC-BH1
- GSM8170511 SGBS Differentiated replicate 1 SGBS Differentiated
- GSM8170512 SGBS Differentiated replicate 2 SGBS Differentiated
- GSM8170513 SGBS Differentiated replicate 3 SGBS Differentiated
- GSM8170514 SGBS Undifferentiated replicate 1 SGBS Undifferentiated
- GSM8170515 SGBS Undifferentiated replicate 2 SGBS Undifferentiated
- GSM8170516 SGBS Undifferentiated replicate 3 SGBS Undifferentiated
- GSM8170517 HEPG2 replicate 1 HEPG2
- GSM8170518 HEPG2 replicate 2 HEPG2
- GSE262484 Implicating type 2 diabetes effector genes in relevant metabolic cellular models using promoter-focused Capture-C 35 samples shares promoter-focused, implicating, capture-c, diabetes, effector, relevant, cellular, type
- GSE262479 Implicating type 2 diabetes effector genes in relevant metabolic cellular models using promoter-focused Capture-C [ATAC-Seq] 12 samples shares promoter-focused, implicating, capture-c, diabetes, effector, relevant, cellular, type
- GSE262480 Implicating type 2 diabetes effector genes in relevant metabolic cellular models using promoter-focused Capture-C [RNA-Seq] 10 samples shares promoter-focused, implicating, capture-c, diabetes, effector, relevant, cellular, type
- GSE255566 Single-cell RNA sequencing of peripheral blood mononuclear cells reveals complex cellular signalling signatures of type 2 diabetes mellitus 8 samples shares diabetes, cellular, type
- GSE273594 Single-cell multiome profiling reveals pancreas cell type-specific gene regulatory programs of type 1 diabetes progression [multiome] 8 samples shares diabetes, type
- GSE261281 Bioinformatics and single-cell CRISPRi-based screen reveals effector genes and implicates multi-tissue etiology for BMD [Capture-C] 3 samples shares capture-c, effector
- GSE81608 RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes 1600 samples shares diabetes, type
- GSE86473 Single cell transcriptomics defines human islet cell signatures and reveals cell-type-specific expression changes in type 2 diabetes 662 samples shares diabetes, type
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.