Micro bulk sequencing on murine Bleomycin-induced fibrotic lungs sorted on SA-β-Gal and GD3
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 4 × GD3+ Bgal vs 4 × GD3- Bgal+ vs 4 × GD3- Bgal vs 3 × GD3+ Bgal+Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A ganglioside-based immune checkpoint enables senescent cells to evade immunosurveillance during agingNature aging · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE262926_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1094922 and SRA study SRP499017. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 4 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8181568 GD3+ Bgal+ 1 GD3+ Bgal+
- GSM8181569 GD3+ Bgal- 1 GD3+ Bgal
- GSM8181570 GD3- Bgal+ 1 GD3- Bgal+
- GSM8181571 GD3- Bgal- 1 GD3- Bgal
- GSM8181572 GD3+ Bgal+ 2 GD3+ Bgal+
- GSM8181573 GD3+ Bgal- 2 GD3+ Bgal
- GSM8181574 GD3- Bgal+ 2 GD3- Bgal+
- GSM8181575 GD3- Bgal- 2 GD3- Bgal
- GSM8181576 GD3+ Bgal+ 3 GD3+ Bgal+
- GSM8181577 GD3+ Bgal- 3 GD3+ Bgal
- GSM8181578 GD3- Bgal+ 3 GD3- Bgal+
- GSM8181579 GD3- Bgal- 3 GD3- Bgal
- GSM8181580 GD3+ Bgal- 4 GD3+ Bgal
- GSM8181581 GD3- Bgal+ 4 GD3- Bgal+
- GSM8181582 GD3- Bgal- 4 GD3- Bgal
- GSE319684 Timecourse of FACS sorted Ly6C+ monocytes, tissue resident alveolar macrophages (trAMs), monocyte derived alveolar macrophages (bmAMs) and epithelial cells from SARS-CoV-2 (maVie16) vs. IAV (PR8) infected mouse lungs 176 samples shares sa, sorted, lungs
- GSE332646 Bulk RNA-seq of juvenile mouse liver following NDMA or saline treatment in WT and Mgmt-/- genotypes across multiple timepoints 214 samples shares sa, bulk
- GSE276647 Gene expression profile of microglia following traumatic brain injury and nasal anti-CD3 treatment at acute and chronic timepoints 54 samples shares sa, micro
- GSE263080 RNA-sea of Smad4 wild-type or Smad4 knockout KPC PDAC organoids from monocultures or co-cultures with pancreatic stellate cells and RNA-seq of flow-sorted PSCs from the same co-cultures. 44 samples shares sa, sorted
- GSE319612 Rothia mucilaginosa Alleviates Constipation through Gut Microbiota Remodeling and Neuroactive Pathway Activation 26 samples shares sa, micro
- GSE290008 Bulk RNAseq of Basal Cell Carcinoma (BCC) mouse models 21 samples shares sa, bulk
- GSE330238 Bulk RNA-seq of dorsal root ganglion (DRG) neuron with 3 conditions 9 samples shares sa, bulk
- GSE59739 RNA-Seq of single cells from the mouse lumbar dorsal root ganglion 864 samples shares sa
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.