Intravenous immunoglobulin (IVIg) ameliorates disease in a murine model of anti-laminin 332 mucous membrane pemphigoid
RNA-seq (gene expression) · mouse · 46 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 46 samples: 37 distinct titles, 5 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Intravenous Ig Ameliorates Disease in a Murine Model of Anti-Laminin 332 Mucous Membrane PemphigoidThe Journal of investigative dermatology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE263026_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1095470 and SRA study SRP499345. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 46 sample titles: 37 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8183543 m1_unstimulated
- GSM8183544 m2_unstimulated
- GSM8183545 m3_unstimulated
- GSM8183546 m4_unstimulated
- GSM8183547 S5_blood_5
- GSM8183548 S3_blood_14_ivig
- GSM8183549 S5_neutrophils_5
- GSM8183550 S5_neutrophils_14_ivig
- GSM8183551 S2_neutrophils_10
- GSM8183552 S3_neutrophils_1_ivig
- GSM8183553 S3_neutrophils_2
- GSM8183554 S3_neutrophils_5_ivig
- GSM8183555 S3_neutrophils_9
- GSM8183556 S3_neutrophils_10_ivig
- GSM8183557 S3_neutrophils_13
- GSM8183558 S5_blood_14_ivig
- GSM8183559 S3_neutrophils_14_ivig
- GSM8183560 S5_Monocytes_1
- GSM8183561 S5_Monocytes_2_ivig
- GSM8183562 S5_Monocytes_5
- GSM8183563 S5_Monocytes_13_ivig
- GSM8183564 S2_Monocytes_9
- GSM8183565 S3_Monocytes_13
- GSM8183566 S3_Monocytes_14_ivig
- GSM8183567 S3_Monocytes_1
- GSM8183568 S3_blood_1
- GSM8183569 S5_Skin_1
- GSM8183570 S5_Skin_2_ivig
- GSM8183571 S5_Skin_5
- GSM8183572 S5_Skin_6_ivig
- GSM8183573 S5_Skin_10
- GSM8183574 m1_stimul_Ics_3h
- GSM8183575 m2_stimul_Ics_3h
- GSM8183576 m3_stimul_Ics_3h
- GSM8183577 m4_stimul_Ics_3h
- GSM8183578 S3_blood_2_ivig
- GSM8183579 S5_Skin_13_ivig
- GSM8183580 S3_blood_5
- GSM8183581 S3_blood_6_ivig
- GSM8183582 m1_stimul_Ics_6h
+ 6 more — browse all 46 samples with per-sample file links →
- GSE329124 RNA-seq profiling of mouse small intestine treated with intravenous immunoglobulin (IVIg) after total abdominal irradiation 9 samples shares immunoglobulin, intravenous, ivig
- GSE276761 IL-10-dependent Treg-microglia crosstalk induced by nasal anti-CD3 mAb ameliorates traumatic brain injury by modulating microglial phagocytosis and neuroinflammation. 136 samples shares ameliorates
- GSE289553 Immunoglobulin A controls intestinal virus colonization to preserve immune homeostasis [ZE309] 88 samples shares immunoglobulin
- GSE282889 Reduction of intestinal RIPK1 ameliorates HFD-induced metabolic disorders in female mice 74 samples shares ameliorates
- GSE289554 Immunoglobulin A controls intestinal virus colonization to preserve immune homeostasis [ZE303] 60 samples shares immunoglobulin
- GSE298240 Inhibition of p38 MAPK after repetitive mild TBI ameliorates immune signaling and behavioral deficit 58 samples shares ameliorates
- GSE316703 Microbiota-Derived Isovalerate Ameliorates Sex-Specific Gut Barrier Dysfunction in Malnutrition [RNA-seq colon epithelium] 50 samples shares ameliorates
- GSE230078 Targeting the intestinal circadian clock by meal timing ameliorates gastrointestinal inflammation 48 samples shares ameliorates
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.