RNA-seq profiling of mouse small intestine treated with intravenous immunoglobulin (IVIg) after total abdominal irradiation
RNA-seq (gene expression) · mouse · 9 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE329124_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1440482. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 9 more — browse all 9 samples with per-sample file links →
- GSE316220 Bulk RNA-seq of multi-tissue transcriptomes from control and DHEA-treated mice (ovary, uterus, thymus, brain, heart, intestine, kidney, liver and spleen) 20 samples shares intestine, rna-seq, treated
- GSE342329 Transcriptomic profiling of small intestine from irinotecan-treated wild-type and Gsdme-deficient mice 8 samples shares intestine, treated, small
- GSE263026 Intravenous immunoglobulin (IVIg) ameliorates disease in a murine model of anti-laminin 332 mucous membrane pemphigoid 46 samples shares immunoglobulin, intravenous
- GSE255078 RNAseq of proximal small intestine scrapings of mice fed a galactose, glucose, or lactose-containing diet during postweaning 39 samples shares intestine, small
- GSE331146 Ketohexokinase deletion on liver and small intestine transcriptome 32 samples shares intestine, small
- GSE289523 Gene expression profiles of WT and epithlial GSDMD ko mouse intestine [bulk RNA-seq] 30 samples shares intestine, rna-seq
- GSE216972 Effect of stroke on the transcriptome in the small intestines 29 samples shares intestine, small
- GSE301477 RNA-seq analysis of arterial smooth muscle cells (ASMCs) isolated from the lung, heart, aorta, stomach, intestine, kidney and bladder 22 samples shares intestine, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.