Studies of eRF1 in mammalian cells
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE263724_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1098850 and SRA study SRP500858. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8197288 ribosome profiling Gcn2 knockout eRF1-dTAG mESCs untreated, biological replicate A
- GSM8197289 ribosome profiling Gcn2 knockout eRF1-dTAG mESCs untreated, biological replicate B
- GSM8197290 ribosome profiling Gcn2 knockout eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate A
- GSM8197291 ribosome profiling Gcn2 knockout eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate B
- GSM8197292 ribosome profiling eRF1-dTAG mESCs, biological replicate A
- GSM8197293 ribosome profiling eRF1-dTAG mESCs, biological replicate B
- GSM8197294 ribosome profiling eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate A
- GSM8197295 ribosome profiling eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate B
- GSM8197296 poly(A) RNAseq eRF1-dTAG mESCs, biological replicate A
- GSM8197297 poly(A) RNAseq eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate A
- GSM8197298 poly(A) RNAseq eRF1-dTAG mESCs, biological replicate B
- GSM8197299 poly(A) RNAseq eRF1-dTAG mESCs treated with 1hr 500nM dTAG-13, biological replicate B
- GSE281268 A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [scRNA-seq] 28 samples shares mammalian
- GSE254723 Extensive folding variability between homologous chromosomes in mammalian cells 2239 samples shares mammalian
- GSE196779 Nucleolar migration regulates meiotic sex chromosome inactivation via phase separation during mammalian spermatogenesis 30 samples shares mammalian
- GSE268132 Plasticity of the Mammalian Integrated Stress Response [eIF2B5_eIF4E] 24 samples shares mammalian
- GSE45719 Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cells 317 samples shares mammalian
- GSE333859 A global view of cell-type-specific temporal dynamics in mammalian aging 1496 samples shares mammalian
- GSE248196 Characterizing dynamics and lineage of bihormonal cell in mammalian pancreatic islets 1440 samples shares mammalian
- GSE248194 Characterizing dynamics and lineage of bihormonal cell in mammalian pancreatic islets [Smart-seq3xpress] 1430 samples shares mammalian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.