Expression data from primary hepatocytes isolated from miR-143DOX mice
Expression microarray · mouse · 6 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples: 3 × miR-143DOX hepatocytes, vs 3 × control hepatocytes,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE26460_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA136569. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 6 samples.
How we read this: 2 replicated groups read from 6 sample titles; they account for 6 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM649508 miR-143DOX hepatocytes, biological rep1 miR-143DOX hepatocytes,
- GSM649509 control hepatocytes, biological rep1 control hepatocytes,
- GSM649510 control hepatocytes, biological rep2 control hepatocytes,
- GSM649511 miR-143DOX hepatocytes, biological rep2 miR-143DOX hepatocytes,
- GSM649512 control hepatocytes, biological rep3 control hepatocytes,
- GSM649513 miR-143DOX hepatocytes, biological rep3 miR-143DOX hepatocytes,
- GSE309637 Effects of TCDD on gene expression in hepatocytes isolated from WT and PkmΔDRE mice. 144 samples shares hepatocytes, isolated
- GSE284186 Gene expression profile at single cell level of hepatocytes and non parenchymal cells (NPCs) isolated from a murine model of MASLD 8 samples shares hepatocytes, isolated
- GSE274374 Benzbromarone exacerbates high-fat-induced lipid accumulation in primary hepatocytes by activating PPARγ [OA] 12 samples shares hepatocytes, primary
- GSE280301 Culturing of primary mouse hepatocytes is associated with major changes to the proteome and transcriptome 12 samples shares hepatocytes, primary
- GSE276001 mRNA Sequencing Analysis of MCM7 Knockdown in Primary Hepatocytes Under IL-6 Stimulation 12 samples shares hepatocytes, primary
- GSE155577 Gene expression data from epithelial and mesenchymal tumor cells isolated from E-A14 mouse mammary tumors grown in immunodeficient and immunocompetent mice 26 samples shares isolated
- GSE285689 Bile duct ligation (BDL)-induced changes on the gene expression of different primary cells in mice liver. 18 samples shares primary
- GSE326909 scRNAseq Dataset of lungs from WT and Clec1a KO mice following primary or secondary E. coli lung infection 12 samples shares primary
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.