Nuclear functions of CFAP20 in transcription and replication
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 39 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 39 samples: 14 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CFAP20 salvages arrested RNAPII from the path of co-directional replisomesNature · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE266575_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1107608 and SRA study SRP505592. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 33 samples.
How we read this: 14 replicated groups read from 39 sample titles; they account for 33 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8251630 BrUseq, WT, rep1 BrUseq, WT,
- GSM8251631 BrUseq, CFAP20KO, rep1 BrUseq, CFAP20KO,
- GSM8251632 BrUseq, WT, rep2 BrUseq, WT,
- GSM8251633 BrUseq, CFAP20Rescue, rep1
- GSM8251634 BrUseq, WT, rep3 BrUseq, WT,
- GSM8251635 BrUseq, CFAP20KO, rep2 BrUseq, CFAP20KO,
- GSM8251636 BrUseq, CFAP20KO, rep3 BrUseq, CFAP20KO,
- GSM8251637 CHIPseq, WT, rep1 CHIPseq, WT,
- GSM8251638 CHIPseq, CFAP20-KO, rep1
- GSM8251639 CHIPseq, CFAP20/CCNC-dKO, rep1
- GSM8251640 DRIPseq, WT, mock, rep1 DRIPseq, WT, mock,
- GSM8251641 DRIPseq, WT, RNAseH, rep1
- GSM8251642 DRIPseq, CFAP20KO, mock, rep1 DRIPseq, CFAP20KO, mock,
- GSM8251643 DRIPseq, CFAP20KO, RNAseH, rep1 DRIPseq, CFAP20KO, RNAs…
- GSM8251644 DRIPseq, WT, mock, rep2 DRIPseq, WT, mock,
- GSM8251645 DRIPseq, CFAP20KO, mock, rep2 DRIPseq, CFAP20KO, mock,
- GSM8251646 DRIPseq, CFAP20KO, RNAseH, rep2 DRIPseq, CFAP20KO, RNAs…
- GSM8251647 FLASHseq, CFAP20KO, rep1 FLASHseq, CFAP20KO,
- GSM8251648 FLASHseq, CFAP20KO, rep2 FLASHseq, CFAP20KO,
- GSM8251649 FLASHseq, CFAP20tagged, rep1 FLASHseq, CFAP20tagged,
- GSM8251650 FLASHseq, CFAP20tagged, rep2 FLASHseq, CFAP20tagged,
- GSM8251651 TTchemDRBseq, WT, 30min, rep1 TTchemDRBseq, WT, 30min,
- GSM8251652 TTchemDRBseq, CFAP20-KO, 30min, rep1 TTchemDRBseq, CFAP20-KO…
- GSM8251653 TTchemDRBseq, WT, 60min, rep1 TTchemDRBseq, WT, 60min,
- GSM8251654 TTchemDRBseq, CFAP20-KO, 60min, rep1 TTchemDRBseq, CFAP20-KO…
- GSM8251655 TTchemDRBseq, WT, 30min, rep2 TTchemDRBseq, WT, 30min,
- GSM8251656 TTchemDRBseq, CFAP20-KO, 30min, rep2 TTchemDRBseq, CFAP20-KO…
- GSM8251657 TTchemDRBseq, WT, 60min, rep2 TTchemDRBseq, WT, 60min,
- GSM8251658 TTchemDRBseq, CFAP20-KO, 60min, rep2 TTchemDRBseq, CFAP20-KO…
- GSM9003236 CHIPseq-TY, WT, rep1 CHIPseq-TY, WT,
- GSM9003237 CHIPseq-TY, WT, rep2 CHIPseq-TY, WT,
- GSM9003238 CHIPseq-TY, WT, rep3 CHIPseq-TY, WT,
- GSM9003239 CHIPseq-TY, CFAP20-KO + TY-CFAP20, rep1 CHIPseq-TY, CFAP20-KO +…
- GSM9003240 CHIPseq-TY, CFAP20-KO + TY-CFAP20, rep2 CHIPseq-TY, CFAP20-KO +…
- GSM9003241 CHIPseq-TY, CFAP20-KO + TY-CFAP20, rep3 CHIPseq-TY, CFAP20-KO +…
- GSM9016874 CHIPseq, WT, rep2 CHIPseq, WT,
- GSM9016875 CHIPseq, WT, rep3 CHIPseq, WT,
- GSM9017059 TTchemDRBseq, CFAP20-KO + TY-CFAP20-WT, 60min, rep2
- GSM9017060 TTchemDRBseq, CFAP20-KO + TY-CFAP20-R100C, 60min, rep2
- GSE306993 Transcriptional and epigenetic targets of MEF2C in human microglia contribute to cellular functions related to autism risk and age-related disease. 76 samples shares transcription, functions
- GSE253121 NELF prevents transcriptional readthrough into DNA replication zones in cancer cells 70 samples shares transcription, replication
- GSE239858 BRCA2 suppresses “head-on” transcription-replication conflicts incurred by dormant origin firing at transcription termination sites 14 samples shares transcription, replication
- GSE314310 Cardiopedia-Ligand: a Ligand Stimulation Atlas for Cardiac Function and Transcriptional Response 468 samples shares transcription
- GSE303576 Rb-driven transcription limits its tumour suppressive effects in breast cancer 279 samples shares transcription
- GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases 274 samples shares transcription
- GSE303478 Systematic investigation reveals extensive Epstein-Barr virus transcriptional regulation of the human genome 217 samples shares transcription
- GSE271676 Spatial Transcriptional Landscape of Human Heart Failure 178 samples shares transcription
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.